Codon bias as a means to fine-tune gene expression

TEF Quax, NJ Claassens, D Söll, J van der Oost - Molecular cell, 2015 - cell.com
The redundancy of the genetic code implies that most amino acids are encoded by multiple
synonymous codons. In all domains of life, a biased frequency of synonymous codons is …

Ribosome profiling: global views of translation

NT Ingolia, JA Hussmann… - Cold Spring Harbor …, 2019 - cshperspectives.cshlp.org
The translation of messenger RNA (mRNA) into protein and the folding of the resulting
protein into an active form are prerequisites for virtually every cellular process and represent …

Translation in prokaryotes

MV Rodnina - Cold Spring Harbor perspectives in …, 2018 - cshperspectives.cshlp.org
This review summarizes our current understanding of translation in prokaryotes, focusing on
the mechanistic and structural aspects of each phase of translation: initiation, elongation …

Roadblocks and resolutions in eukaryotic translation

AP Schuller, R Green - Nature Reviews Molecular Cell Biology, 2018 - nature.com
During protein synthesis, ribosomes encounter many roadblocks, the outcomes of which are
largely determined by substrate availability, amino acid features and reaction kinetics …

Ribosome profiling: new views of translation, from single codons to genome scale

NT Ingolia - Nature reviews genetics, 2014 - nature.com
Genome-wide analyses of gene expression have so far focused on the abundance of mRNA
species as measured either by microarray or, more recently, by RNA sequencing. However …

eIF5A functions globally in translation elongation and termination

AP Schuller, CCC Wu, TE Dever, AR Buskirk, R Green - Molecular cell, 2017 - cell.com
The eukaryotic translation factor eIF5A, originally identified as an initiation factor, was later
shown to promote translation elongation of iterated proline sequences. Using a combination …

A systematically-revised ribosome profiling method for bacteria reveals pauses at single-codon resolution

F Mohammad, R Green, AR Buskirk - Elife, 2019 - elifesciences.org
In eukaryotes, ribosome profiling provides insight into the mechanism of protein synthesis at
the codon level. In bacteria, however, the method has been more problematic and no …

Chloroplast translation: structural and functional organization, operational control, and regulation

R Zoschke, R Bock - The Plant Cell, 2018 - academic.oup.com
Chloroplast translation is essential for cellular viability and plant development. Its positioning
at the intersection of organellar RNA and protein metabolism makes it a unique point for the …

eIF5A promotes translation of polyproline motifs

E Gutierrez, BS Shin, CJ Woolstenhulme, JR Kim… - Molecular cell, 2013 - cell.com
Translation factor eIF5A, containing the unique amino acid hypusine, was originally shown
to stimulate Met-puromycin synthesis, a model assay for peptide bond formation. More …

Dom34 rescues ribosomes in 3′ untranslated regions

NR Guydosh, R Green - Cell, 2014 - cell.com
Ribosomes that stall before completing peptide synthesis must be recycled and returned to
the cytoplasmic pool. The protein Dom34 and cofactors Hbs1 and Rli1 can dissociate stalled …