A guide for the diagnosis of rare and undiagnosed disease: beyond the exome

S Marwaha, JW Knowles, EA Ashley - Genome medicine, 2022 - Springer
Rare diseases affect 30 million people in the USA and more than 300–400 million
worldwide, often causing chronic illness, disability, and premature death. Traditional …

Opportunities and challenges in long-read sequencing data analysis

SL Amarasinghe, S Su, X Dong, L Zappia, ME Ritchie… - Genome biology, 2020 - Springer
Long-read technologies are overcoming early limitations in accuracy and throughput,
broadening their application domains in genomics. Dedicated analysis tools that take into …

Bioinformatics and computational tools for next-generation sequencing analysis in clinical genetics

R Pereira, J Oliveira, M Sousa - Journal of clinical medicine, 2020 - mdpi.com
Clinical genetics has an important role in the healthcare system to provide a definitive
diagnosis for many rare syndromes. It also can have an influence over genetics prevention …

Repeat expansions confer WRN dependence in microsatellite-unstable cancers

N van Wietmarschen, S Sridharan, WJ Nathan… - Nature, 2020 - nature.com
Abstract The RecQ DNA helicase WRN is a synthetic lethal target for cancer cells with
microsatellite instability (MSI), a form of genetic hypermutability that arises from impaired …

Utility of long-read sequencing for All of Us

M Mahmoud, Y Huang, K Garimella, PA Audano… - Nature …, 2024 - nature.com
Abstract The All of Us (AoU) initiative aims to sequence the genomes of over one million
Americans from diverse ethnic backgrounds to improve personalized medical care. In a …

[HTML][HTML] Population-scale long-read sequencing uncovers transposable elements associated with gene expression variation and adaptive signatures in Drosophila

GE Rech, S Radío, S Guirao-Rico, L Aguilera… - Nature …, 2022 - nature.com
High quality reference genomes are crucial to understanding genome function, structure and
evolution. The availability of reference genomes has allowed us to start inferring the role of …

[HTML][HTML] Next-generation sequencing for constitutional variants in the clinical laboratory, 2021 revision: a technical standard of the American College of Medical …

C Rehder, LJH Bean, D Bick, E Chao, W Chung… - Genetics in …, 2021 - Elsevier
Next-generation sequencing (NGS) technologies are now established in clinical laboratories
as a primary testing modality in genomic medicine. These technologies have reduced the …

[HTML][HTML] Targeted long-read sequencing identifies missing disease-causing variation

DE Miller, A Sulovari, T Wang, H Loucks… - The American Journal of …, 2021 - cell.com
Despite widespread clinical genetic testing, many individuals with suspected genetic
conditions lack a precise diagnosis, limiting their opportunity to take advantage of state-of …

The use of whole genome and exome sequencing for newborn screening: challenges and opportunities for population health

AC Woerner, RC Gallagher, J Vockley… - Frontiers in …, 2021 - frontiersin.org
Newborn screening (NBS) is a population-based program with a goal of reducing the
burden of disease for conditions with significant clinical impact on neonates. Screening tests …

Establishing a second-generation artificial intelligence-based system for improving diagnosis, treatment, and monitoring of patients with rare diseases

N Hurvitz, H Azmanov, A Kesler, Y Ilan - European Journal of Human …, 2021 - nature.com
Patients with rare diseases are a major challenge for healthcare systems. These patients
face three major obstacles: late diagnosis and misdiagnosis, lack of proper response to …