The exposome and health: Where chemistry meets biology

R Vermeulen, EL Schymanski, AL Barabási, GW Miller - Science, 2020 - science.org
Despite extensive evidence showing that exposure to specific chemicals can lead to
disease, current research approaches and regulatory policies fail to address the chemical …

A guide to conquer the biological network era using graph theory

M Koutrouli, E Karatzas, D Paez-Espino… - … in bioengineering and …, 2020 - frontiersin.org
Networks are one of the most common ways to represent biological systems as complex sets
of binary interactions or relations between different bioentities. In this article, we discuss the …

Plant developmental stage drives the differentiation in ecological role of the maize microbiome

C Xiong, BK Singh, JZ He, YL Han, PP Li, LH Wan… - Microbiome, 2021 - Springer
Background Plants live with diverse microbial communities which profoundly affect multiple
facets of host performance, but if and how host development impacts the assembly, functions …

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

S Banerjee, F Walder, L Büchi, M Meyer… - The ISME …, 2019 - academic.oup.com
Root-associated microbes play a key role in plant performance and productivity, making
them important players in agroecosystems. So far, very few studies have assessed the …

A landscape of response to drug combinations in non-small cell lung cancer

NU Nair, P Greninger, X Zhang, AA Friedman… - Nature …, 2023 - nature.com
Combination of anti-cancer drugs is broadly seen as way to overcome the often-limited
efficacy of single agents. The design and testing of combinations are however very …

Simplicial closure and higher-order link prediction

AR Benson, R Abebe, MT Schaub… - Proceedings of the …, 2018 - National Acad Sciences
Networks provide a powerful formalism for modeling complex systems by using a model of
pairwise interactions. But much of the structure within these systems involves interactions …

Computational network biology: data, models, and applications

C Liu, Y Ma, J Zhao, R Nussinov, YC Zhang, F Cheng… - Physics Reports, 2020 - Elsevier
Biological entities are involved in intricate and complex interactions, in which uncovering the
biological information from the network concepts are of great significance. Benefiting from …

[HTML][HTML] The diversity and co-occurrence network of soil bacterial and fungal communities and their implications for a new indicator of grassland degradation

X Wu, J Yang, H Ruan, S Wang, Y Yang, I Naeem… - Ecological …, 2021 - Elsevier
Grassland degradation is a retrogressive succession of grassland vegetation, which leads to
the loss of biodiversity and the degradation of ecosystem functions. Soil microbiomes play …

Biochar loaded with bacteria enhanced Cd/Zn phytoextraction by facilitating plant growth and shaping rhizospheric microbial community

A Shi, Y Hu, X Zhang, D Zhou, J Xu, C Rensing… - Environmental …, 2023 - Elsevier
Biochar and metal-tolerant bacteria have been widely used in the remediation of heavy
metal contaminated soil. However, the synergistic effect of biochar-functional microbes on …

[HTML][HTML] Remediation of organic amendments on soil salinization: Focusing on the relationship between soil salts and microbial communities

X Mao, Y Yang, P Guan, L Geng, L Ma, H Di… - Ecotoxicology and …, 2022 - Elsevier
Soil salinization has emerged as a major factor with an adverse influence on agricultural
green development worldwide. It is necessary to develop high-efficiency and ecologically …