State-of-the-art application of artificial intelligence to transporter-centered functional and pharmaceutical research

J Yin, N You, F Li, M Lu, S Zeng… - Current Drug …, 2023 - ingentaconnect.com
Protein transporters not only have essential functions in regulating the transport of
endogenous substrates and remote communication between organs and organisms, but …

Recent advances in features generation for membrane protein sequences: From multiple sequence alignment to pre‐trained language models

YY Ou, QT Ho, HT Chang - Proteomics, 2023 - Wiley Online Library
Membrane proteins play a crucial role in various cellular processes and are essential
components of cell membranes. Computational methods have emerged as a powerful tool …

TRP-BERT: Discrimination of transient receptor potential (TRP) channels using contextual representations from deep bidirectional transformer based on BERT

SMA Shah, YY Ou - Computers in Biology and Medicine, 2021 - Elsevier
Transient receptor potential (TRP) channels are non-selective cation channels that act as
ion channels and are primarily found on the plasma membrane of numerous animal cells …

Integrating Pre-Trained protein language model and multiple window scanning deep learning networks for accurate identification of secondary active transporters in …

MS Malik, YY Ou - Methods, 2023 - Elsevier
Secondary active transporters play pivotal roles in regulating ion and molecule transport
across cell membranes, with implications in diseases like cancer. However, studying …

Identification of efflux proteins based on contextual representations with deep bidirectional transformer encoders

SW Taju, SMA Shah, YY Ou - Analytical biochemistry, 2021 - Elsevier
Efflux proteins are the transport proteins expressed in the plasma membrane, which are
involved in the movement of unwanted toxic substances through specific efflux pumps …

Data-driven technology roadmaps to identify potential technology opportunities for hyperuricemia drugs

L Feng, W Zhao, J Wang, KY Lin, Y Guo, L Zhang - Pharmaceuticals, 2022 - mdpi.com
Hyperuricemia is a metabolic disease with an increasing incidence in recent years. It is
critical to identify potential technology opportunities for hyperuricemia drugs to assist drug …