Circular RNAs: diversity of form and function

E Lasda, R Parker - Rna, 2014 - rnajournal.cshlp.org
It is now clear that there is a diversity of circular RNAs in biological systems. Circular RNAs
can be produced by the direct ligation of 5′ and 3′ ends of linear RNAs, as intermediates …

Homing endonuclease structure and function

BL Stoddard - Quarterly reviews of biophysics, 2005 - cambridge.org
Homing endonucleases are encoded by open reading frames that are embedded within
group I, group II and archael introns, as well as inteins (intervening sequences that are …

Ribosomal RNA genes in eukaryotic microorganisms: witnesses of phylogeny?

AL Torres-Machorro, R Hernández… - FEMS microbiology …, 2010 - academic.oup.com
The study of genomic organization and regulatory elements of rRNA genes in metazoan
paradigmatic organisms has led to the most accepted model of rRNA gene organization in …

Group I introns: moving in new directions

H Nielsen, SD Johansen - RNA biology, 2009 - Taylor & Francis
Group I introns are genetic elements interrupting functional genes. They are removed from
precursors at the RNA level and most catalyze their own splicing. The catalytic part of these …

Autocatalytic RNA cleavage in the human β-globin pre-mRNA promotes transcription termination

A Teixeira, A Tahiri-Alaoui, S West, B Thomas… - Nature, 2004 - nature.com
New evidence indicates that termination of transcription is an important regulatory step,
closely related to transcriptional interference and even transcriptional initiation. However …

Sex or no sex? Group I introns and independent marker genes reveal the existence of three sexual but reproductively isolated biospecies in Trichia varia …

Y Feng, M Schnittler - Organisms Diversity & Evolution, 2015 - Springer
Plasmodial slime molds are members of the class Amoebozoa forming elaborate fruit bodies
releasing airborne spores. Two species concepts have been developed independently: a …

An mRNA is capped by a 2', 5'lariat catalyzed by a group I-like ribozyme

H Nielsen, E Westhof, S Johansen - Science, 2005 - science.org
Twin-ribozyme introns are formed by two ribozymes belonging to the group I family and
occur in some ribosomal RNA transcripts. The group I-like ribozyme, GIR1, liberates the 5 …

Speciation of a group I intron into a lariat capping ribozyme

M Meyer, H Nielsen, V Oliéric… - Proceedings of the …, 2014 - National Acad Sciences
The lariat-capping (LC) ribozyme is a natural ribozyme isolated from eukaryotic
microorganisms. Despite apparent structural similarity to group I introns, the LC ribozyme …

Nuclear group I introns in self-splicing and beyond

A Hedberg, SD Johansen - Mobile DNA, 2013 - Springer
Group I introns are a distinct class of RNA self-splicing introns with an ancient origin. All
known group I introns present in eukaryote nuclei interrupt functional ribosomal RNA genes …

The ability to form full-length intron RNA circles is a general property of nuclear group I introns

H Nielsen, T Fiskaa, ÅSAB BIRGISDOTTIR, P Haugen… - RNA, 2003 - rnajournal.cshlp.org
In addition to splicing, group I intron RNA is capable of an alternative two-step processing
pathway that results in the formation of full-length intron circular RNA. The circularization …