Estimating evolutionary distances between genomic sequences from spaced-word matches
B Morgenstern, B Zhu, S Horwege… - Algorithms for Molecular …, 2015 - Springer
Alignment-free methods are increasingly used to calculate evolutionary distances between
DNA and protein sequences as a basis of phylogeny reconstruction. Most of these methods …
DNA and protein sequences as a basis of phylogeny reconstruction. Most of these methods …
A Provably Efficient Algorithm for the k-Mismatch Average Common Substring Problem
SV Thankachan, A Apostolico, S Aluru - Journal of Computational …, 2016 - liebertpub.com
Alignment-free sequence comparison methods are attracting persistent interest, driven by
data-intensive applications in genome-wide molecular taxonomy and phylogenetic …
data-intensive applications in genome-wide molecular taxonomy and phylogenetic …
The Statistics of Parametrized Syncmers in a Simple Mutation Process Without Spurious Matches
Introduction: Often, bioinformatics uses summary sketches to analyze next-generation
sequencing data, but most sketches are not well understood statistically. Under a simple …
sequencing data, but most sketches are not well understood statistically. Under a simple …
[PDF][PDF] Efficient estimation of evolutionary distances
F Klötzl - 2015 - pure.mpg.de
Efficient Estimation of Evolutionary Distances Page 1 Efficient Estimation of Evolutionary
Distances Effizientes Schätzen von evolutionären Distanzen Masterarbeit im Rahmen des …
Distances Effizientes Schätzen von evolutionären Distanzen Masterarbeit im Rahmen des …
[PDF][PDF] Thesis Supervisor: Tetsuo Shibuya 渋谷哲朗
小野寺拓 - 2015 - repository.dl.itc.u-tokyo.ac.jp
ABSTRACT DNA, RNA and proteins are basic biopolymers that are used universally among
almost all biological systems. Inferring the functions of these molecules from their sequential …
almost all biological systems. Inferring the functions of these molecules from their sequential …
[引用][C] A Novel Pseudo-Alignment Approach to Fast Genomic Sequence Comparison
CA Leimeister - 2015