A Hanke, R Ziraldo, SD Levene - Molecules, 2021 - mdpi.com
The topological properties of DNA molecules, supercoiling, knotting, and catenation, are intimately connected with essential biological processes, such as gene expression …
This article traces the pioneering contributions of phage Mu to our current knowledge of how movable elements move/transpose. Mu provided the first molecular evidence of insertion …
VZ Akhverdyan, ER Gak, IL Tokmakova… - Applied microbiology …, 2011 - Springer
The advantages of phage Mu transposition-based systems for the chromosomal editing of plasmid-less strains are reviewed. The cis and trans requirements for Mu phage-mediated …
F Dyda, M Chandler, AB Hickman - Quarterly reviews of biophysics, 2012 - cambridge.org
DNA transposases are enzymes that catalyze the movement of discrete pieces of DNA from one location in the genome to another. Transposition occurs through a series of controlled …
W Choi, RM Harshey - … of the National Academy of Sciences, 2010 - National Acad Sciences
Phage Mu transposes by two distinct pathways depending on the specific stage of its life cycle. A common θ strand transfer intermediate is resolved differentially in the two pathways …
We describe a new immunity mechanism that protects actively replicating/transposing Mu from self-integration. We show that this mechanism is distinct from the established cis …
I Darcy, J Luecke, M Vazquez - Algebraic & Geometric Topology, 2009 - msp.org
We develop topological methods for analyzing difference topology experiments involving 3– string tangles. Difference topology is a novel technique used to unveil the structure of stable …
IK Darcy, M Vazquez - Biochemical Society Transactions, 2013 - portlandpress.com
Difference topology is an experimental technique that can be used to unveil the topological structure adopted by two or more DNA segments in a stable protein–DNA complex …
M Jayaram, R Harshey - Mathematics of DNA Structure, Function and …, 2009 - Springer
DNA transactions in biological systems are often carried out by multisubunit protein assemblies that confer a defined topology on their DNA target sites. A subset of …