An FPGA accelerator of the wavefront algorithm for genomics pairwise alignment

A Haghi, S Marco-Sola, L Alvarez… - … Conference on Field …, 2021 - ieeexplore.ieee.org
In the last years, advances in next-generation sequencing technologies have enabled the
proliferation of genomic applications that guide personalized medicine. These applications …

WFA-FPGA: An efficient accelerator of the wavefront algorithm for short and long read genomics alignment

A Haghi, S Marco-Sola, L Alvarez… - Future Generation …, 2023 - Elsevier
In the last years, advances in genome sequencing technologies have enabled the
proliferation of genomic applications that guide personalized medicine. These applications …

A parallel approximate string matching under Levenshtein distance on graphics processing units using warp-shuffle operations

TL Ho, SR Oh, HJ Kim - PloS one, 2017 - journals.plos.org
Approximate string matching with k-differences has a number of practical applications,
ranging from pattern recognition to computational biology. This paper proposes an efficient …

A scalable multiple pairwise protein sequence alignment acceleration using hybrid CPU–GPU approach

L Alawneh, MA Shehab, M Al-Ayyoub, Y Jararweh… - Cluster …, 2020 - Springer
Bioinformatics is an interdisciplinary field that applies trending techniques in information
technology, mathematics, and statistics in studying large biological data. Bioinformatics …

RETRACTED ARTICLE: Application of deep learning algorithm in college English teaching process evaluation

X Zhao - Behaviour & Information Technology, 2021 - Taylor & Francis
We, the Editors and Publisher of the journal Behaviour & Information Technology, have
retracted the following article which was part of the Special Issue on Behaviour Monitoring …

Accelerating Multiple Sequence Alignments Using Parallel Computing

Q Bani Baker, RA Al-Hussien, M Al-Ayyoub - Computation, 2024 - mdpi.com
Multiple sequence alignment (MSA) stands as a critical tool for understanding the
evolutionary and functional relationships among biological sequences. Obtaining an exact …

Toward a new approach for sorting extremely large data files in the big data era

A Shatnawi, Y AlZahouri, MA Shehab, Y Jararweh… - Cluster …, 2019 - Springer
The extensive amount of data and contents generated today will require a paradigm shift in
processing and management techniques for these data. One of the important data …

Toward Efficient Similarity Search under Edit Distance on Hybrid Architectures

M Khalid, MM Yousaf, MU Sadiq - Information, 2022 - mdpi.com
Edit distance is the most widely used method to quantify similarity between two strings. We
investigate the problem of similarity search under edit distance. Given a collection of …

Fast exact sequence alignment using parallel computing

RA Al-Hussien, QB Baker… - 2018 9th International …, 2018 - ieeexplore.ieee.org
Bioinformatics is a growing field that attracts many researchers and continues to prove its
value and significance. Since the early days of discovering genomic martial and using it to …

Semiglobal sequence alignment with gaps using GPU

TC Carroll, JT Ojiaku, PWH Wong - IEEE/ACM Transactions on …, 2019 - ieeexplore.ieee.org
In this paper, we consider the pair-wise semiglobal sequence alignment problem with gaps,
which is motivated by the re-sequencing problem that requires to assemble short reads …