Pseudogenes in cancer: state of the art

AK Nakamura-García, J Espinal-Enríquez - Cancers, 2023 - mdpi.com
Simple Summary Out of the billions of nucleotides comprising the human DNA, a substantial
proportion (98%) represents non-coding DNA, meaning DNA that is not translated into …

Linking protein structural and functional change to mutation using amino acid networks

C Sotomayor-Vivas, E Hernández-Lemus… - Plos one, 2022 - journals.plos.org
The function of a protein is strongly dependent on its structure. During evolution, proteins
acquire new functions through mutations in the amino-acid sequence. Given the advance in …

Methylation-related genes involved in renal carcinoma progression

JM Zamora-Fuentes, E Hernández-Lemus… - Frontiers in …, 2023 - frontiersin.org
Renal carcinomas are a group of malignant tumors often originating in the cells lining the
small tubes in the kidney responsible for filtering waste from the blood and urine production …

Functional impact of multi-omic interactions in breast cancer subtypes

S Ochoa, E Hernández-Lemus - Frontiers in Genetics, 2023 - frontiersin.org
Multi-omic approaches are expected to deliver a broader molecular view of cancer.
However, the promised mechanistic explanations have not quite settled yet. Here, we …

The role of copy number variants in gene co-expression patterns for luminal b breast tumors

C Hernández-Gómez, E Hernández-Lemus… - Frontiers in …, 2022 - frontiersin.org
Gene co-expression networks have become a usual approach to integrate the vast amounts
of information coming from gene expression studies in cancer cohorts. The reprogramming …

Drug repurposing for Basal breast cancer subpopulations using modular network signatures

H Coria-Rodríguez, S Ochoa… - … Biology and Chemistry, 2023 - Elsevier
Breast cancer is characterized as being a heterogeneous pathology with a broad phenotype
variability. Breast cancer subtypes have been developed in order to capture some of this …

Gene co-expression in breast cancer: A matter of distance

A González-Espinoza, J Zamora-Fuentes… - Frontiers in …, 2021 - frontiersin.org
Gene regulatory and signaling phenomena are known to be relevant players underlying the
establishment of cellular phenotypes. It is also known that such regulatory programs are …

[HTML][HTML] Single-Sample Networks Reveal Intra-Cytoband Co-Expression Hotspots in Breast Cancer Subtypes

R Ponce-Cusi, P López-Sánchez… - International Journal of …, 2024 - mdpi.com
Breast cancer is a heterogeneous disease comprising various subtypes with distinct
molecular characteristics, clinical outcomes, and therapeutic responses. This heterogeneity …

The network structure of hematopoietic cancers

AK Nakamura-García, J Espinal-Enríquez - Scientific Reports, 2023 - nature.com
Hematopoietic cancers (HCs) are a heterogeneous group of malignancies that affect blood,
bone marrow and lymphatic system. Here, by analyzing 1960 RNA-Seq samples from three …

CNVs in 8q24. 3 do not influence gene co-expression in breast cancer subtypes

C Hernández-Gómez, E Hernández-Lemus… - Frontiers in …, 2023 - frontiersin.org
Gene co-expression networks are a useful tool in the study of interactions that have allowed
the visualization and quantification of diverse phenomena, including the loss of co …