Spatial transcriptomics of the respiratory system

S Megas, A Wilbrey-Clark, A Maartens… - Annual Review of …, 2024 - annualreviews.org
Over the last decade, single-cell genomics has revealed remarkable heterogeneity and
plasticity of cell types in the lungs and airways. The challenge now is to understand how …

Spatial transcriptomics data and analytical methods: an updated perspective

S Khan, JJ Kim - Drug Discovery Today, 2024 - Elsevier
Spatial transcriptomics (ST) is a newly emerging field that integrates high-resolution imaging
and transcriptomic data to enable the high-throughput analysis of the spatial localization of …

The tidyomics ecosystem: Enhancing omic data analyses

WJ Hutchison, TJ Keyes, Tidyomics Consortium… - Nature …, 2024 - nature.com
The growth of omic data presents evolving challenges in data manipulation, analysis and
integration. Addressing these challenges, Bioconductor provides an extensive community …

Bin2cell reconstructs cells from high resolution Visium HD data

K Polański, R Bartolomé-Casado, I Sarropoulos… - …, 2024 - academic.oup.com
Abstract Summary Visium HD by 10X Genomics is the first commercially available platform
capable of capturing full scale transcriptomic data paired with a reference morphology …

Single cell RNA-sequencing in uveal melanoma: advances in heterogeneity, tumor microenvironment and immunotherapy

S Tang, Y Zhang, S Huang, T Zhu, X Huang - Frontiers in Immunology, 2024 - frontiersin.org
Uveal melanoma (UM) is a highly aggressive and fatal tumor in the eye, and due the special
biology of UM, immunotherapy showed little effect in UM patients. To improve the efficacy of …

Crosstalk of T cells within the ovarian cancer microenvironment

BS Chap, N Rayroux, AJ Grimm, E Ghisoni, DD Laniti - Trends in Cancer, 2024 - cell.com
Ovarian cancer (OC) represents ecosystems of highly diverse tumor microenvironments
(TMEs). The presence of tumor-infiltrating lymphocytes (TILs) is linked to enhanced immune …

Biomarkers for immune checkpoint inhibitors in renal cell carcinoma

SD Martin, I Bhuiyan, M Soleimani, G Wang - Journal of Clinical Medicine, 2023 - mdpi.com
Immune checkpoint inhibitor (ICI) therapy has revolutionized renal cell carcinoma treatment.
Patients previously thought to be palliative now occasionally achieve complete cures from …

Application of spatial-omics to the classification of kidney biopsy samples in transplantation

P Tasca, BM van den Berg, TJ Rabelink… - Nature Reviews …, 2024 - nature.com
Improvement of long-term outcomes through targeted treatment is a primary concern in
kidney transplant medicine. Currently, the validation of a rejection diagnosis and …

Spatial Single Cell Analysis of Proteins in 2D Human Gastruloids Using Iterative Immunofluorescence

E Freeburne, S Teague, H Khan, B Li, S Ding… - Current …, 2023 - Wiley Online Library
During development, cell signaling instructs tissue patterning, the process by which initially
identical cells give rise to spatially organized structures consisting of different cell types …

[HTML][HTML] Applications of single‑cell omics and spatial transcriptomics technologies in gastric cancer

L Ren, D Huang, H Liu, L Ning… - Oncology …, 2024 - … .spandidos-publications.com
Gastric cancer (GC) is a prominent contributor to global cancer‑related mortalities, and a
deeper understanding of its molecular characteristics and tumor heterogeneity is required …