Antimicrobial resistance monitoring of water environments: a framework for standardized methods and quality control
Antimicrobial resistance (AMR) is a grand societal challenge with important dimensions in
the water environment that contribute to its evolution and spread. Environmental monitoring …
the water environment that contribute to its evolution and spread. Environmental monitoring …
The use of next generation sequencing for improving food safety: Translation into practice
B Jagadeesan, P Gerner-Smidt, MW Allard, S Leuillet… - Food …, 2019 - Elsevier
Abstract Next Generation Sequencing (NGS) combined with powerful bioinformatic
approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of …
approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of …
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
Antimicrobial resistance (AMR) is a serious threat to global public health, but obtaining
representative data on AMR for healthy human populations is difficult. Here, we use …
representative data on AMR for healthy human populations is difficult. Here, we use …
Genome-resolved metagenomics reveals site-specific diversity of episymbiotic CPR bacteria and DPANN archaea in groundwater ecosystems
Candidate phyla radiation (CPR) bacteria and DPANN archaea are unisolated, small-celled
symbionts that are often detected in groundwater. The effects of groundwater geochemistry …
symbionts that are often detected in groundwater. The effects of groundwater geochemistry …
Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries
P Munk, BE Knudsen, O Lukjancenko, ASR Duarte… - Nature …, 2018 - nature.com
Antimicrobial resistance (AMR) in bacteria and associated human morbidity and mortality is
increasing. The use of antimicrobials in livestock selects for AMR that can subsequently be …
increasing. The use of antimicrobials in livestock selects for AMR that can subsequently be …
Milk microbiota: what are we exactly talking about?
G Oikonomou, MF Addis, C Chassard… - Frontiers in …, 2020 - frontiersin.org
The development of powerful sequencing techniques has allowed, albeit with some biases,
the identification and inventory of complex microbial communities that inhabit different body …
the identification and inventory of complex microbial communities that inhabit different body …
Impact of sequencing depth on the characterization of the microbiome and resistome
Developments in high-throughput next generation sequencing (NGS) technology have
rapidly advanced the understanding of overall microbial ecology as well as occurrence and …
rapidly advanced the understanding of overall microbial ecology as well as occurrence and …
[HTML][HTML] Comparison of DNA extraction methods for human gut microbial community profiling
The human gut harbors a vast range of microbes that have significant impact on health and
disease. Therefore, gut microbiome profiling holds promise for use in early diagnosis and …
disease. Therefore, gut microbiome profiling holds promise for use in early diagnosis and …
Whole genome sequencing and metagenomics for outbreak investigation, source attribution and risk assessment of food‐borne microorganisms
EFSA Panel on Biological Hazards (EFSA … - EFSA …, 2019 - Wiley Online Library
This Opinion considers the application of whole genome sequencing (WGS) and
metagenomics for outbreak investigation, source attribution and risk assessment of food …
metagenomics for outbreak investigation, source attribution and risk assessment of food …
Molecular methods for detection of antimicrobial resistance
Molecular characterization of the genetic mechanism (s) underlying a given phenotypic
result, obtained by traditional antimicrobial sensitivity testing, is now an integral part of many …
result, obtained by traditional antimicrobial sensitivity testing, is now an integral part of many …