Less label, more free: approaches in label‐free quantitative mass spectrometry

KA Neilson, NA Ali, S Muralidharan, M Mirzaei… - …, 2011 - Wiley Online Library
In this review we examine techniques, software, and statistical analyses used in label‐free
quantitative proteomics studies for area under the curve and spectral counting approaches …

Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases

LA Hug, F Maphosa, D Leys… - … of the Royal …, 2013 - royalsocietypublishing.org
Organohalide respiration is an anaerobic bacterial respiratory process that uses
halogenated hydrocarbons as terminal electron acceptors during electron transport-based …

Aerobic biodegradation of the chloroethenes: pathways, enzymes, ecology, and evolution

TE Mattes, AK Alexander… - FEMS Microbiology …, 2010 - academic.oup.com
Extensive use and inadequate disposal of chloroethenes have led to prevalent groundwater
contamination worldwide. The occurrence of the lesser chlorinated ethenes [ie vinyl chloride …

Comparative metaproteomics reveals ocean-scale shifts in microbial nutrient utilization and energy transduction

RM Morris, BL Nunn, C Frazar, DR Goodlett… - The ISME …, 2010 - academic.oup.com
Bacteria and Archaea play critical roles in marine energy fluxes and nutrient cycles by
incorporating and redistributing dissolved organic matter and inorganic nutrients in the …

Exploiting the ecogenomics toolbox for environmental diagnostics of organohalide-respiring bacteria

F Maphosa, WM de Vos, H Smidt - Trends in Biotechnology, 2010 - cell.com
Various 'omics' methods have enabled environmental probing at the molecular level and
have created an important new paradigm in bioremediation design and management …

Localized Plasticity in the Streamlined Genomes of Vinyl Chloride Respiring Dehalococcoides

PJ McMurdie, SF Behrens, JA Müller, J Göke… - PLoS …, 2009 - journals.plos.org
Vinyl chloride (VC) is a human carcinogen and widespread priority pollutant. Here we report
the first, to our knowledge, complete genome sequences of microorganisms able to respire …

Identification of a Chlorobenzene Reductive Dehalogenase in Dehalococcoides sp. Strain CBDB1

L Adrian, J Rahnenführer, J Gobom… - Applied and …, 2007 - Am Soc Microbiol
ABSTRACT A chlorobenzene reductive dehalogenase of the anaerobic dehalorespiring
bacterium Dehalococcoides sp. strain CBDB1 was identified. Due to poor biomass yields …

Identity and transfer of male reproductive gland proteins of the dengue vector mosquito, Aedes aegypti: potential tools for control of female feeding and reproduction

LK Sirot, RL Poulson, MC McKenna, H Girnary… - Insect biochemistry and …, 2008 - Elsevier
Male reproductive gland proteins (mRGPs) impact the physiology and/or behavior of mated
females in a broad range of organisms. We sought to identify mRGPs of the yellow fever …

Identification of a multi‐protein reductive dehalogenase complex in Dehalococcoides mccartyi strain CBDB1 suggests a protein‐dependent respiratory electron …

A Kublik, D Deobald, S Hartwig… - Environmental …, 2016 - Wiley Online Library
D ehalococcoides mccartyi strain CBDB 1 is an obligate organohalide‐respiring bacterium
using only hydrogen as electron donor and halogenated organics as electron acceptor …

Biochemical and genetic bases of dehalorespiration

T Futagami, M Goto, K Furukawa - The chemical record, 2008 - Wiley Online Library
Some anaerobic bacteria can efficiently eliminate one or more halide atoms from
halogenated compounds such as chlorophenols and chloroethenes through reductive …