Genomic epidemiology: whole-genome-sequencing–powered surveillance and outbreak investigation of foodborne bacterial pathogens

X Deng, HC den Bakker… - Annual review of food …, 2016 - annualreviews.org
As we are approaching the twentieth anniversary of PulseNet, a network of public health and
regulatory laboratories that has changed the landscape of foodborne illness surveillance …

Omics in the Red Palm Weevil Rhynchophorus ferrugineus (Olivier) (Coleoptera: Curculionidae): A Bridge to the Pest

MM Manee, FH Alqahtani, BM Al-Shomrani… - Insects, 2023 - mdpi.com
Simple Summary The red palm weevil (RPW) Rhynchophorus ferrugineus (Coleoptera:
Curculionidae) is a species of beetle that depends on palm trees to complete its life cycle …

A large and consistent phylogenomic dataset supports sponges as the sister group to all other animals

P Simion, H Philippe, D Baurain, M Jager, DJ Richter… - Current biology, 2017 - cell.com
Resolving the early diversification of animal lineages has proven difficult, even using
genome-scale datasets. Several phylogenomic studies have supported the classical …

Elevated levels of circulating DNA in cardiovascular disease patients: metagenomic profiling of microbiome in the circulation

V Dinakaran, A Rathinavel, M Pushpanathan… - PloS one, 2014 - journals.plos.org
Cardiovascular diseases (CVDs) are the leading cause of death worldwide. An expanding
body of evidence supports the role of human microbiome in the establishment of CVDs and …

The fecal viral flora of California sea lions

L Li, T Shan, C Wang, C Côté, J Kolman… - Journal of …, 2011 - Am Soc Microbiol
California sea lions are one of the major marine mammal species along the Pacific coast of
North America. Sea lions are susceptible to a wide variety of viruses, some of which can be …

Evidence for hydrogen oxidation and metabolic plasticity in widespread deep-sea sulfur-oxidizing bacteria

K Anantharaman, JA Breier… - Proceedings of the …, 2013 - National Acad Sciences
Hydrothermal vents are a well-known source of energy that powers chemosynthesis in the
deep sea. Recent work suggests that microbial chemosynthesis is also surprisingly …

Positive and purifying selection in mitochondrial genomes of a bird with mitonuclear discordance

HE Morales, A Pavlova, L Joseph… - Molecular …, 2015 - Wiley Online Library
Diversifying selection on metabolic pathways can reduce intraspecific gene flow and
promote population divergence. An opportunity to explore this arises from mitonuclear …

Recent loss of plastid-encoded ndh genes within Erodium (Geraniaceae)

J Chris Blazier, MM Guisinger, RK Jansen - Plant Molecular Biology, 2011 - Springer
Plastid genomes in the flowering plant family Geraniaceae are known to be highly
rearranged based on complete sequences representing the four major genera Erodium …

Viruses in diarrhoeic dogs include novel kobuviruses and sapoviruses

L Li, PA Pesavento, T Shan… - Journal of General …, 2011 - microbiologyresearch.org
The close interactions of dogs with humans and surrounding wildlife provide frequent
opportunities for cross-species virus transmissions. In order to initiate an unbiased …

Next generation sequencing in predicting gene function in podophyllotoxin biosynthesis

JV Marques, KW Kim, C Lee, MA Costa, GD May… - Journal of Biological …, 2013 - ASBMB
Podophyllum species are sources of (−)-podophyllotoxin, an aryltetralin lignan used for semi-
synthesis of various powerful and extensively employed cancer-treating drugs. Its …