Mitigating off‐target effects of small RNAs: conventional approaches, network theory and artificial intelligence

Z Bereczki, B Benczik, OM Balogh… - British Journal of …, 2025 - Wiley Online Library
Three types of highly promising small RNA therapeutics, namely, small interfering RNAs
(siRNAs), microRNAs (miRNAs) and the RNA subtype of antisense oligonucleotides (ASOs) …

The 2022 Nucleic Acids Research database issue and the online molecular biology database collection

DJ Rigden, XM Fernández - Nucleic acids research, 2022 - academic.oup.com
Abstract The 2022 Nucleic Acids Research Database Issue contains 185 papers, including
87 papers reporting on new databases and 85 updates from resources previously published …

Dysregulated Expression Patterns of Circular RNAs in Cancer: Uncovering Molecular Mechanisms and Biomarker Potential

NR DeSouza, KJ Nielsen, T Jarboe, M Carnazza… - Biomolecules, 2024 - mdpi.com
Circular RNAs (circRNAs) are stable, enclosed, non-coding RNA molecules with dynamic
regulatory propensity. Their biogenesis involves a back-splicing process, forming a highly …

miRTarBase 2025: updates to the collection of experimentally validated microRNA–target interactions

S Cui, S Yu, HY Huang, YCD Lin, Y Huang… - Nucleic Acids …, 2025 - academic.oup.com
MicroRNAs (miRNAs) are small non-coding RNAs (18–26 nucleotides) that regulate gene
expression by interacting with target mRNAs, affecting various physiological and …

Heart failure with preserved ejection fraction in pigs causes shifts in posttranscriptional checkpoints

SL Samani, SC Barlow, LA Freeburg… - American Journal …, 2024 - journals.physiology.org
Left ventricular pressure overload (LVPO) can lead to heart failure with a preserved ejection
fraction (HFpEF) and LV chamber stiffness (LV K c) is a hallmark. This project tested the …

Space radiation damage rescued by inhibition of key spaceflight associated miRNAs

JT McDonald, JK Kim, L Farmerie, ML Johnson… - Nature …, 2024 - nature.com
Our previous research revealed a key microRNA signature that is associated with
spaceflight that can be used as a biomarker and to develop countermeasure treatments to …

Altered exosomal miRNA profiles in patients with paraneoplastic cerebellar degeneration

E Tveit Solheim, LC Vestrheim Thomsen… - Annals of Clinical …, 2024 - Wiley Online Library
Objective Patients with ovarian cancer (OC) may develop anti‐Yo‐associated
paraneoplastic cerebellar degeneration (PCD)—a cerebellar ataxia associated with tumor …

An overview of key online resources for human genomics: a powerful and open toolbox for in silico research

DA Forero, DA Bonilla… - Briefings in …, 2024 - academic.oup.com
Recent advances in high-throughput molecular methods have led to an extraordinary
volume of genomics data. Simultaneously, the progress in the computational implementation …

microT-CNN: an avant-garde deep convolutional neural network unravels functional miRNA targets beyond canonical sites

E Zacharopoulou, MD Paraskevopoulou… - Briefings in …, 2025 - academic.oup.com
Abstract microRNAs (miRNAs) are central post-transcriptional gene expression regulators in
healthy and diseased states. Despite decades of effort, deciphering miRNA targets remains …

The role of long non-coding RNA LINC00839 in oral squamous cell carcinoma based on bioinformatics and experimental research

A Kalantary-Charvadeh, S Morovat, S Aslani… - Scientific Reports, 2024 - nature.com
This study explores the role of LINC00839 and its potential interaction with the miR-195-
5p/cyclin E1 (CCNE1) axis in oral squamous cell carcinoma (OSCC). Using The Cancer …