Sequence—evolution—function: computational approaches in comparative genomics

E Koonin, MY Galperin - 2002 - books.google.com
Sequence-Evolution-Function is an introduction to the computational approaches that play a
critical role in the emerging new branch of biology known as functional genomics. The book …

Characterization of the omega class of glutathione transferases

AK Whitbread, A Masoumi, N Tetlow, E Schmuck… - Methods in …, 2005 - Elsevier
The Omega class of cytosolic glutathione transferases was initially recognized by
bioinformatic analysis of human sequence databases, and orthologous sequences were …

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

BJ Haas, AL Delcher, SM Mount… - Nucleic acids …, 2003 - academic.oup.com
The spliced alignment of expressed sequence data to genomic sequence has proven a key
tool in the comprehensive annotation of genes in eukaryotic genomes. A novel algorithm …

Genetic variation in the 6p22. 3 gene DTNBP1, the human ortholog of the mouse dysbindin gene, is associated with schizophrenia

RE Straub, Y Jiang, CJ MacLean, Y Ma… - The American Journal of …, 2002 - cell.com
Prior evidence has supported the existence of multiple susceptibility genes for
schizophrenia. Multipoint linkage analysis of the 270 Irish high-density pedigrees that we …

Mutation of CDH23, encoding a new member of the cadherin gene family, causes Usher syndrome type 1D

H Bolz, B von Brederlow, A Ramírez, EC Bryda… - Nature …, 2001 - nature.com
Usher syndrome type I (USH1) is an autosomal recessive disorder characterized by
congenital sensorineural hearing loss, vestibular dysfunction and visual impairment due to …

Comprehensive splice-site analysis using comparative genomics

N Sheth, X Roca, ML Hastings, T Roeder… - Nucleic acids …, 2006 - academic.oup.com
We have collected over half a million splice sites from five species—Homo sapiens, Mus
musculus, Drosophila melanogaster, Caenorhabditis elegans and Arabidopsis thaliana …

Introns and splicing elements of five diverse fungi

DM Kupfer, SD Drabenstot, KL Buchanan, H Lai… - Eukaryotic …, 2004 - Am Soc Microbiol
Genomic sequences and expressed sequence tag data for a diverse group of fungi
(Saccharomyces cerevisiae, Schizosaccharomyces pombe, Aspergillus nidulans …

Lamin A/C mutation analysis in a cohort of 324 unrelated patients with idiopathic or familial dilated cardiomyopathy

SB Parks, JD Kushner, D Nauman, D Burgess… - American heart …, 2008 - Elsevier
BACKGROUND: Lamin A/C mutations are a well-established cause of dilated
cardiomyopathy (DCM), although their frequency has not been examined in a large cohort of …

A comprehensive analysis of HPV integration loci in anogenital lesions combining transcript and genome-based amplification techniques

C Ziegert, N Wentzensen, S Vinokurova, F Kisseljov… - Oncogene, 2003 - nature.com
Persistent infections with high-risk human papillomaviruses (HPVs) induce dysplastic
lesions of the lower genital tract. Some of these lesions eventually progress to invasive …

Human GC-AG alternative intron isoforms with weak donor sites show enhanced consensus at acceptor exon positions

TA Thanaraj, F Clark - Nucleic acids research, 2001 - academic.oup.com
It has been previously observed that the intrinsically weak variant GC donor sites, in order to
be recognized by the U2-type spliceosome, possess strong consensus sequences …