Graph convolutional networks for computational drug development and discovery

M Sun, S Zhao, C Gilvary, O Elemento… - Briefings in …, 2020 - academic.oup.com
Despite the fact that deep learning has achieved remarkable success in various domains
over the past decade, its application in molecular informatics and drug discovery is still …

Advancing computer-aided drug discovery (CADD) by big data and data-driven machine learning modeling

L Zhao, HL Ciallella, LM Aleksunes, H Zhu - Drug discovery today, 2020 - Elsevier
Highlights•Drug discovery has been advanced to a big data era with a large amount of
public data sources available.•Ten V features (volume, velocity, variety, veracity, validity …

Therapeutic target database update 2018: enriched resource for facilitating bench-to-clinic research of targeted therapeutics

YH Li, CY Yu, XX Li, P Zhang, J Tang… - Nucleic acids …, 2018 - academic.oup.com
Extensive efforts have been directed at the discovery, investigation and clinical monitoring of
targeted therapeutics. These efforts may be facilitated by the convenient access of the …

NOREVA: normalization and evaluation of MS-based metabolomics data

B Li, J Tang, Q Yang, S Li, X Cui, Y Li… - Nucleic acids …, 2017 - academic.oup.com
Diverse forms of unwanted signal variations in mass spectrometry-based metabolomics data
adversely affect the accuracies of metabolic profiling. A variety of normalization methods …

New perspectives on how to discover drugs from herbal medicines: CAM′ S outstanding contribution to modern therapeutics

SY Pan, SF Zhou, SH Gao, ZL Yu… - Evidence‐Based …, 2013 - Wiley Online Library
With tens of thousands of plant species on earth, we are endowed with an enormous wealth
of medicinal remedies from Mother Nature. Natural products and their derivatives represent …

DrugBank 3.0: a comprehensive resource for 'omics' research on drugs

C Knox, V Law, T Jewison, P Liu, S Ly… - Nucleic acids …, 2010 - academic.oup.com
Abstract DrugBank (http://www. drugbank. ca) is a richly annotated database of drug and
drug target information. It contains extensive data on the nomenclature, ontology, chemistry …

Unrealized targets in the discovery of antibiotics for gram-negative bacterial infections

U Theuretzbacher, B Blasco, M Duffey… - Nature Reviews Drug …, 2023 - nature.com
Advances in areas that include genomics, systems biology, protein structure determination
and artificial intelligence provide new opportunities for target-based antibacterial drug …

What contributes to serotonin–norepinephrine reuptake inhibitors' dual-targeting mechanism? The key role of transmembrane domain 6 in human serotonin and …

W Xue, F Yang, P Wang, G Zheng, Y Chen… - ACS chemical …, 2018 - ACS Publications
Dual inhibition of serotonin and norepinephrine transporters (hSERT and hNET) gives
greatly improved efficacy and tolerability for treating major depressive disorder (MDD) …

DGIdb: mining the druggable genome

M Griffith, OL Griffith, AC Coffman, JV Weible… - Nature …, 2013 - nature.com
Abstract The Drug-Gene Interaction database (DGIdb) mines existing resources that
generate hypotheses about how mutated genes might be targeted therapeutically or …

Recognizing pitfalls in virtual screening: a critical review

T Scior, A Bender, G Tresadern… - Journal of chemical …, 2012 - ACS Publications
The aim of virtual screening (VS) is to identify bioactive compounds through computational
means, by employing knowledge about the protein target (structure-based VS) or known …