Assembly, Assessment, and Availability of De novo Generated Eukaryotic Transcriptomes
J Moreton, A Izquierdo, RD Emes - Frontiers in genetics, 2016 - frontiersin.org
De novo assembly of a complete transcriptome without the need for a guiding reference
genome is attractive, particularly where the cost and complexity of generating a eukaryote …
genome is attractive, particularly where the cost and complexity of generating a eukaryote …
A genome-wide transcriptome map of pistachio (Pistacia vera L.) provides novel insights into salinity-related genes and marker discovery
M Moazzzam Jazi, SM Seyedi, E Ebrahimie… - BMC genomics, 2017 - Springer
Abstract Background Pistachio (Pistacia vera L.) is one of the most important commercial nut
crops worldwide. It is a salt-tolerant and long-lived tree, with the largest cultivation area in …
crops worldwide. It is a salt-tolerant and long-lived tree, with the largest cultivation area in …
Genomics of forest trees
NR Street - Advances in botanical research, 2019 - Elsevier
Over the past decade increasing availability and decreasing costs of “next” generation
sequencing has revolutionised our ability to assay numerous aspects of genome function …
sequencing has revolutionised our ability to assay numerous aspects of genome function …
Computational considerations in transcriptome assemblies and their evaluation, using high quality human rna-seq data
It is crucial to understand the performance of transcriptome assemblies to improve current
practices. Investigating the factors that affect a transcriptome assembly is very important and …
practices. Investigating the factors that affect a transcriptome assembly is very important and …
Microarray-Based Quality Assessment as a Supporting Criterion for de novo Transcriptome Assembly Selection
P Carvajal-López, FD Von Borstel… - IEEE/ACM …, 2018 - ieeexplore.ieee.org
RNA-Sequencing and de novo assembly have enabled the analysis of species with non-
available reference transcriptomes, although intrinsic features (biological and technical) …
available reference transcriptomes, although intrinsic features (biological and technical) …
What are the most influencing factors in reconstructing a reliable transcriptome assembly?
Reconstructing the genome and transcriptome for a new or extant species are essential
steps in expanding our understanding of the organism's active RNA landscape and gene …
steps in expanding our understanding of the organism's active RNA landscape and gene …