Towards full-stack deep learning-empowered data processing pipeline for synchrotron tomography experiments

Z Zhang, C Li, W Wang, Z Dong, G Liu, Y Dong… - The Innovation, 2024 - cell.com
Synchrotron tomography experiments are transitioning into multifunctional, cross-scale, and
dynamic characterizations, enabled by new-generation synchrotron light sources and fast …

[PDF][PDF] Upscaling X-ray nanoimaging to macroscopic specimens

M Du, Z Di, D Gürsoy, RP Xian… - Journal of applied …, 2021 - journals.iucr.org
Upscaling X-ray nanoimaging to macroscopic specimens has the potential for providing
insights across multiple length scales, but its feasibility has long been an open question. By …

Fast X‐ray Nanotomography with Sub‐10 nm Resolution as a Powerful Imaging Tool for Nanotechnology and Energy Storage Applications

V De Andrade, V Nikitin, M Wojcik, A Deriy… - Advanced …, 2021 - Wiley Online Library
In the last decade, transmission X‐ray microscopes (TXMs) have come into operation in
most of the synchrotrons worldwide. They have proven to be outstanding tools for non …

[PDF][PDF] TomocuPy–efficient GPU-based tomographic reconstruction with asynchronous data processing

V Nikitin - Journal of Synchrotron Radiation, 2023 - journals.iucr.org
Fast 3D data analysis and steering of a tomographic experiment by changing environmental
conditions or acquisition parameters require fast, close to real-time, 3D reconstruction of …

[HTML][HTML] Virtual histology of an entire mouse brain from formalin fixation to paraffin embedding. Part 1: Data acquisition, anatomical feature segmentation, tracking …

G Rodgers, W Kuo, G Schulz, M Scheel, A Migga… - Journal of Neuroscience …, 2021 - Elsevier
Background: Micrometer-resolution neuroimaging with gold-standard conventional histology
requires tissue fixation and embedding. The exchange of solvents for the creation of …

Data processing methods and data acquisition for samples larger than the field of view in parallel-beam tomography

NT Vo, RC Atwood, M Drakopoulos, T Connolley - Optics Express, 2021 - opg.optica.org
Parallel-beam tomography systems at synchrotron facilities have limited field of view (FOV)
determined by the available beam size and detector system coverage. Scanning the full size …

Multiscale X-ray phase-contrast tomography: from breast CT to micro-CT for virtual histology

LMA Peña, S Donato, D Bonazza, L Brombal… - Physica Medica, 2023 - Elsevier
Phase-contrast imaging techniques address the issue of poor soft-tissue contrast
encountered in traditional X-ray imaging. This can be accomplished with the propagation …

Adorym: A multi-platform generic X-ray image reconstruction framework based on automatic differentiation

M Du, S Kandel, J Deng, X Huang, A Demortiere… - Optics express, 2021 - opg.optica.org
We describe and demonstrate an optimization-based X-ray image reconstruction framework
called Adorym. Our framework provides a generic forward model, allowing one code …

Micrometer-resolution X-ray tomographic full-volume reconstruction of an intact post-mortem juvenile rat lung

E Borisova, G Lovric, A Miettinen, L Fardin… - Histochemistry and cell …, 2021 - Springer
In this article, we present an X-ray tomographic imaging method that is well suited for
pulmonary disease studies in animal models to resolve the full pathway from gas intake to …

Petascale XCT: 3D image reconstruction with hierarchical communications on multi-GPU nodes

M Hidayetoğlu, T Bicer, SG De Gonzalo… - … Conference for High …, 2020 - ieeexplore.ieee.org
X-ray computed tomography is a commonly used technique for noninvasive imaging at
synchrotron facilities. Iterative tomographic reconstruction algorithms are often preferred for …