A comprehensive survey of recent advancements in molecular communication

N Farsad, HB Yilmaz, A Eckford… - … Surveys & Tutorials, 2016 - ieeexplore.ieee.org
With much advancement in the field of nanotechnology, bioengineering, and synthetic
biology over the past decade, microscales and nanoscales devices are becoming a reality …

Designing cell function: assembly of synthetic gene circuits for cell biology applications

M Xie, M Fussenegger - Nature Reviews Molecular Cell Biology, 2018 - nature.com
Synthetic biology is the discipline of engineering application-driven biological functionalities
that were not evolved by nature. Early breakthroughs of cell engineering, which were based …

Emerging biomedical applications of synthetic biology

W Weber, M Fussenegger - Nature Reviews Genetics, 2012 - nature.com
Synthetic biology aims to create functional devices, systems and organisms with novel and
useful functions on the basis of catalogued and standardized biological building blocks …

Synthetic biology: integrated gene circuits

N Nandagopal, MB Elowitz - science, 2011 - science.org
A major goal of synthetic biology is to develop a deeper understanding of biological design
principles from the bottom up, by building circuits and studying their behavior in cells …

Systems biology of cellular rhythms

A Goldbeter, C Gérard, D Gonze, JC Leloup… - FEBS …, 2012 - Wiley Online Library
► Detailed survey of experimental and modeling approaches to cellular rhythms.► Cellular
rhythms in development: from cAMP oscillations to the segmentation clock.► Frequency …

p53 pulses diversify target gene expression dynamics in an mRNA half-life-dependent manner and delineate co-regulated target gene subnetworks

JR Porter, BE Fisher, E Batchelor - Cell systems, 2016 - cell.com
The transcription factor p53 responds to DNA double-strand breaks by increasing in
concentration in a series of pulses of fixed amplitude, duration, and period. How p53 pulses …

Synthetic switches and regulatory circuits in plants

J Andres, T Blomeier, MD Zurbriggen - Plant Physiology, 2019 - academic.oup.com
Synthetic biology is an established but ever-growing interdisciplinary field of research
currently revolutionizing biomedicine studies and the biotech industry. The engineering of …

Entrainment to periodic initiation and transition rates in a computational model for gene translation

M Margaliot, ED Sontag, T Tuller - PloS one, 2014 - journals.plos.org
Periodic oscillations play an important role in many biomedical systems. Proper functioning
of biological systems that respond to periodic signals requires the ability to synchronize with …

Incoherent inputs enhance the robustness of biological oscillators

Z Li, S Liu, Q Yang - Cell systems, 2017 - cell.com
Robust biological oscillators retain the critical ability to function in the presence of
environmental perturbations. Although central architectures that support robust oscillations …

p53 pulse modulation differentially regulates target gene promoters to regulate cell fate decisions

MD Harton, WS Koh, AD Bunker, A Singh… - Molecular Systems …, 2019 - embopress.org
The p53 tumor suppressor regulates distinct responses to cellular stresses. Although
different stresses generate different p53 dynamics, the mechanisms by which cells decode …