Global positioning system: understanding long noncoding RNAs through subcellular localization

J Carlevaro-Fita, R Johnson - Molecular cell, 2019 - cell.com
The localization of long noncoding RNAs (lncRNAs) within the cell is the primary
determinant of their molecular functions. LncRNAs are often thought of as chromatin …

Formaldehyde crosslinking: a tool for the study of chromatin complexes

EA Hoffman, BL Frey, LM Smith, DT Auble - Journal of Biological Chemistry, 2015 - ASBMB
Formaldehyde has been used for decades to probe macromolecular structure and function
and to trap complexes, cells, and tissues for further analysis. Formaldehyde crosslinking is …

Foundations of chemical reaction network theory

M Feinberg - 2019 - Springer
When I am called upon to teach fluid mechanics, I always show students a copy of Newton's
Principia. I do this for a number of reasons, not least of which is the connection I hope they …

[图书][B] Fractional diffusion equations and anomalous diffusion

LR Evangelista, EK Lenzi - 2018 - books.google.com
Anomalous diffusion has been detected in a wide variety of scenarios, from fractal media,
systems with memory, transport processes in porous media, to fluctuations of financial …

GraphLncLoc: long non-coding RNA subcellular localization prediction using graph convolutional networks based on sequence to graph transformation

M Li, B Zhao, R Yin, C Lu, F Guo… - Briefings in …, 2023 - academic.oup.com
The subcellular localization of long non-coding RNAs (lncRNAs) is crucial for understanding
lncRNA functions. Most of existing lncRNA subcellular localization prediction methods use k …

Formulation, construction and analysis of kinetic models of metabolism: A review of modelling frameworks

PA Saa, LK Nielsen - Biotechnology advances, 2017 - Elsevier
Kinetic models are critical to predict the dynamic behaviour of metabolic networks.
Mechanistic kinetic models for large networks remain uncommon due to the difficulty of fitting …

The physics and physical chemistry of molecular machines

RD Astumian, S Mukherjee, A Warshel - ChemPhysChem, 2016 - Wiley Online Library
The concept of a “power stroke”—a free‐energy releasing conformational change—appears
in almost every textbook that deals with the molecular details of muscle, the flagellar rotor …

[图书][B] A first course in systems biology

E Voit - 2017 - taylorfrancis.com
A First Course in Systems Biology is an introduction for advanced undergraduate and
graduate students to the growing field of systems biology. Its main focus is the development …

Mathematical analysis of chemical reaction systems

PY Yu, G Craciun - Israel Journal of Chemistry, 2018 - Wiley Online Library
The use of mathematical methods for the analysis of chemical reaction systems has a very
long history, and involves many types of models: deterministic versus stochastic, continuous …

DeepLncLoc: a deep learning framework for long non-coding RNA subcellular localization prediction based on subsequence embedding

M Zeng, Y Wu, C Lu, F Zhang, FX Wu… - Briefings in …, 2022 - academic.oup.com
Long non-coding RNAs (lncRNAs) are a class of RNA molecules with more than 200
nucleotides. A growing amount of evidence reveals that subcellular localization of lncRNAs …