Pathways of cellular proteostasis in aging and disease

CL Klaips, GG Jayaraj, FU Hartl - Journal of Cell Biology, 2018 - rupress.org
Ensuring cellular protein homeostasis, or proteostasis, requires precise control of protein
synthesis, folding, conformational maintenance, and degradation. A complex and adaptive …

TP 53 mutations in human cancer: database reassessment and prospects for the next decade

B Leroy, M Anderson, T Soussi - Human mutation, 2014 - Wiley Online Library
More than 50% of human tumors carry TP 53 gene mutations and in consequence more
than 45,000 somatic and germline mutations have been gathered in the UMD TP 53 …

PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels

Y Choi, AP Chan - Bioinformatics, 2015 - academic.oup.com
We present a web server to predict the functional effect of single or multiple amino acid
substitutions, insertions and deletions using the prediction tool PROVEAN. The server …

Comparison and integration of deleteriousness prediction methods for nonsynonymous SNVs in whole exome sequencing studies

C Dong, P Wei, X Jian, R Gibbs… - Human molecular …, 2015 - academic.oup.com
Accurate deleteriousness prediction for nonsynonymous variants is crucial for distinguishing
pathogenic mutations from background polymorphisms in whole exome sequencing (WES) …

Predicting the functional effect of amino acid substitutions and indels

Y Choi, GE Sims, S Murphy, JR Miller, AP Chan - 2012 - journals.plos.org
As next-generation sequencing projects generate massive genome-wide sequence
variation data, bioinformatics tools are being developed to provide computational …

PredictSNP: robust and accurate consensus classifier for prediction of disease-related mutations

J Bendl, J Stourac, O Salanda, A Pavelka… - PLoS computational …, 2014 - journals.plos.org
Single nucleotide variants represent a prevalent form of genetic variation. Mutations in the
coding regions are frequently associated with the development of various genetic diseases …

Predicting the functional, molecular, and phenotypic consequences of amino acid substitutions using hidden Markov models

HA Shihab, J Gough, DN Cooper, PD Stenson… - Human …, 2013 - Wiley Online Library
The rate at which nonsynonymous single nucleotide polymorphisms (ns SNP s) are being
identified in the human genome is increasing dramatically owing to advances in whole …

Predicting the functional impact of protein mutations: application to cancer genomics

B Reva, Y Antipin, C Sander - Nucleic acids research, 2011 - academic.oup.com
As large-scale re-sequencing of genomes reveals many protein mutations, especially in
human cancer tissues, prediction of their likely functional impact becomes important …

Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm

P Kumar, S Henikoff, PC Ng - Nature protocols, 2009 - nature.com
The effect of genetic mutation on phenotype is of significant interest in genetics. The type of
genetic mutation that causes a single amino acid substitution (AAS) in a protein sequence is …

Identifying Mendelian disease genes with the variant effect scoring tool

H Carter, C Douville, PD Stenson, DN Cooper… - BMC genomics, 2013 - Springer
Background Whole exome sequencing studies identify hundreds to thousands of rare
protein coding variants of ambiguous significance for human health. Computational tools are …