RNA G-quadruplexes in biology: principles and molecular mechanisms

MM Fay, SM Lyons, P Ivanov - Journal of molecular biology, 2017 - Elsevier
Abstract G-quadruplexes (G4s) are extremely stable DNA or RNA secondary structures
formed by sequences rich in guanine. These structures are implicated in many essential …

Effects of molecular crowding on the structures, interactions, and functions of nucleic acids

S Nakano, D Miyoshi, N Sugimoto - Chemical reviews, 2014 - ACS Publications
Nucleic acids are excellent at recognizing complementary sequences through the formation
of Watson− Crick base pairs. Since the base pairing enables the highly selective …

The diverse structural landscape of quadruplexes

HL Lightfoot, T Hagen, NJ Tatum, J Hall - FEBS letters, 2019 - Wiley Online Library
G‐quadruplexes are secondary structures formed in G‐rich sequences in DNA and RNA.
Considerable research over the past three decades has led to in‐depth insight into these …

G-quadruplex-based aptamers targeting human thrombin: Discovery, chemical modifications and antithrombotic effects

C Riccardi, E Napolitano, C Platella… - Pharmacology & …, 2021 - Elsevier
First studies on thrombin-inhibiting DNA aptamers were reported in 1992, and since then a
large number of anticoagulant aptamers has been discovered. TBA–also named HD1, a 15 …

G-quadruplex DNA aptamers and their ligands: structure, function and application

WO Tucker, KT Shum… - Current pharmaceutical …, 2012 - ingentaconnect.com
Highly specific and tight-binding nucleic acid aptamers have been selected against a variety
of molecular targets for over 20 years. A significant proportion of these oligonucleotides …

Monomorphic RNA G-quadruplex and polymorphic DNA G-quadruplex structures responding to cellular environmental factors

DH Zhang, T Fujimoto, S Saxena, HQ Yu, D Miyoshi… - Biochemistry, 2010 - ACS Publications
We systematically and quantitatively investigated the structure and thermodynamics of G-
quadruplexes of RNAs and corresponding DNAs of the same sequences under molecular …

Thermodynamic stability of G‐quadruplexes: impact of sequence and environment

J Jana, K Weisz - ChemBioChem, 2021 - Wiley Online Library
G‐quadruplexes have attracted growing interest in recent years due to their occurrence in
vivo and their possible biological functions. In addition to being promising targets for drug …

Structure, properties, and biological relevance of the DNA and RNA G-quadruplexes: Overview 50 years after their discovery

NG Dolinnaya, AM Ogloblina, MG Yakubovskaya - Biochemistry (Moscow), 2016 - Springer
Abstract G-quadruplexes (G4s), which are known to have important roles in regulation of key
biological processes in both normal and pathological cells, are the most actively studied non …

Loop permutation affects the topology and stability of G-quadruplexes

M Cheng, Y Cheng, J Hao, G Jia, J Zhou… - Nucleic acids …, 2018 - academic.oup.com
G-quadruplexes are unusual DNA and RNA secondary structures ubiquitous in a variety of
organisms including vertebrates, plants, viruses and bacteria. The folding topology and …

Loop residues of thrombin-binding DNA aptamer impact G-quadruplex stability and thrombin binding

S Nagatoishi, N Isono, K Tsumoto, N Sugimoto - Biochimie, 2011 - Elsevier
The thrombin-binding DNA aptamer (TBA) 5′-d (GGTTGGTGTGGTTGG)-3′ forms a G-
quadruplex that is necessary for binding to the coagulation factor thrombin. The stability of …