In this narrative review, we comprehensively review the available information about the recognition, structure, and dynamics of antimicrobial peptides (AMPs). Their complex …
Macromolecular liquids display short-time anomalous behaviors in disagreement with conventional single-molecule mean-field theories. In this study, we analyze the behavior of …
Structural information of protein complexes is fundamental for the rational drug design and improvement of vaccines and biosensors. Also, protein misassembly can have severe …
ER Beyerle, MG Guenza - The Journal of Chemical Physics, 2021 - pubs.aip.org
Molecular Dynamics (MD) simulations of proteins implicitly contain the information connecting the atomistic molecular structure and proteins' biologically relevant motion …
ER Beyerle, MG Guenza - The Journal of chemical physics, 2019 - pubs.aip.org
Local fluctuations are important for protein binding and molecular recognition because they provide conformational states that can be trapped through a selection mechanism of …
We investigate the universal scaling of protein fluctuation dynamics with a site-specific diffusive model of protein motion, which predicts an initial subdiffusive regime in the …
ER Beyerle, MG Guenza - The Journal of Chemical Physics, 2021 - pubs.aip.org
The biological function and folding mechanisms of proteins are often guided by large-scale slow motions, which involve crossing high energy barriers. In a simulation trajectory, these …
The review covers the progress in the field of NMR relaxation in fluids primarily during 2019. Since the topic is returning to this volume SPR after a break of a few years, some highlights …
MG Guenza - Coarse-Grained Modeling of Biomolecules, 2017 - taylorfrancis.com
This chapter summarizes the coarse-graining (CG) approach that is called the Integral Equation Coarse-Grained (IECG) model. In most CG models, which are numerically solved …