CRISPR technologies for precise epigenome editing

M Nakamura, Y Gao, AA Dominguez, LS Qi - Nature Cell Biology, 2021 - nature.com
The epigenome involves a complex set of cellular processes governing genomic activity.
Dissecting this complexity necessitates the development of tools capable of specifically …

The next generation of CRISPR–Cas technologies and applications

A Pickar-Oliver, CA Gersbach - Nature reviews Molecular cell biology, 2019 - nature.com
The prokaryote-derived CRISPR–Cas genome editing systems have transformed our ability
to manipulate, detect, image and annotate specific DNA and RNA sequences in living cells …

Optimized libraries for CRISPR-Cas9 genetic screens with multiple modalities

KR Sanson, RE Hanna, M Hegde, KF Donovan… - Nature …, 2018 - nature.com
The creation of genome-wide libraries for CRISPR knockout (CRISPRko), interference
(CRISPRi), and activation (CRISPRa) has enabled the systematic interrogation of gene …

Beyond editing: repurposing CRISPR–Cas9 for precision genome regulation and interrogation

AA Dominguez, WA Lim, LS Qi - Nature reviews Molecular cell biology, 2016 - nature.com
The bacterial CRISPR–Cas9 system has emerged as a multifunctional platform for
sequence-specific regulation of gene expression. This Review describes the development of …

Highly specific epigenome editing by CRISPR-Cas9 repressors for silencing of distal regulatory elements

PI Thakore, AM D'ippolito, L Song, A Safi… - Nature …, 2015 - nature.com
Epigenome editing with the CRISPR (clustered, regularly interspaced, short palindromic
repeats)-Cas9 platform is a promising technology for modulating gene expression to direct …

CRISPR–Cas9 epigenome editing enables high-throughput screening for functional regulatory elements in the human genome

TS Klann, JB Black, M Chellappan, A Safi, L Song… - Nature …, 2017 - nature.com
Large genome-mapping consortia and thousands of genome-wide association studies have
identified non-protein-coding elements in the genome as having a central role in various …

Functional annotation of native enhancers with a Cas9–histone demethylase fusion

NA Kearns, H Pham, B Tabak, RM Genga… - Nature …, 2015 - nature.com
Understanding of mammalian enhancers is limited by the lack of a technology to rapidly and
thoroughly test the cell type–specific function. Here, we use a nuclease-deficient Cas9 …

[HTML][HTML] TALE and TALEN genome editing technologies

S Becker, J Boch - Gene and Genome Editing, 2021 - Elsevier
TALEN were the first easy-to-use genome editing technology and sparked the genome
editing revolution. Their application in multiple species brought targeted mutagenesis to the …

Single cell RNA-sequencing of pluripotent states unlocks modular transcriptional variation

AA Kolodziejczyk, JK Kim, JCH Tsang, T Ilicic… - Cell stem cell, 2015 - cell.com
Embryonic stem cell (ESC) culture conditions are important for maintaining long-term self-
renewal, and they influence cellular pluripotency state. Here, we report single cell RNA …

Editing the epigenome: technologies for programmable transcription and epigenetic modulation

PI Thakore, JB Black, IB Hilton, CA Gersbach - Nature methods, 2016 - nature.com
Gene regulation is a complex and tightly controlled process that defines cell identity, health
and disease, and response to pharmacologic and environmental signals. Recently …