[HTML][HTML] From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes
Metagenomic sequencing of complete microbial communities has greatly enhanced our
understanding of the taxonomic composition of microbiotas. This has led to breakthrough …
understanding of the taxonomic composition of microbiotas. This has led to breakthrough …
The sum is greater than the parts: exploiting microbial communities to achieve complex functions
Highlights•Microbe–microbe and microbe–host interactions are indispensable for life.•Multi-
omics approaches, synthetic biology, and computational tools have allowed interventions on …
omics approaches, synthetic biology, and computational tools have allowed interventions on …
Biohydrogen production beyond the Thauer limit by precision design of artificial microbial consortia
İ Ergal, O Gräf, B Hasibar, M Steiner, S Vukotić… - Communications …, 2020 - nature.com
Dark fermentative biohydrogen (H2) production could become a key technology for
providing renewable energy. Until now, the H2 yield is restricted to 4 moles of H2 per mole …
providing renewable energy. Until now, the H2 yield is restricted to 4 moles of H2 per mole …
Reprogramming microbial populations using a programmed lysis system to improve chemical production
Microbial populations are a promising model for achieving microbial cooperation to produce
valuable chemicals. However, regulating the phenotypic structure of microbial populations …
valuable chemicals. However, regulating the phenotypic structure of microbial populations …
Chaos in synthetic microbial communities
Predictability is a fundamental requirement in biological engineering. As we move to
building coordinated multicellular systems, the potential for such systems to display chaotic …
building coordinated multicellular systems, the potential for such systems to display chaotic …
iHyd-PseAAC (EPSV): identifying hydroxylation sites in proteins by extracting enhanced position and sequence variant feature via chou's 5-step rule and general …
A Ehsan, MK Mahmood, YD Khan… - Current …, 2019 - ingentaconnect.com
Background: In various biological processes and cell functions, Post Translational
Modifications (PTMs) bear critical significance. Hydroxylation of proline residue is one kind …
Modifications (PTMs) bear critical significance. Hydroxylation of proline residue is one kind …
[HTML][HTML] Biobased short chain fatty acid production-Exploring microbial community dynamics and metabolic networks through kinetic and microbial modeling …
In recent years, there has been growing interest in harnessing anaerobic digestion
technology for resource recovery from waste streams. This approach has evolved beyond its …
technology for resource recovery from waste streams. This approach has evolved beyond its …
Metagenome-based metabolic modelling predicts unique microbial interactions in deep-sea hydrothermal plume microbiomes
Deep-sea hydrothermal vents are abundant on the ocean floor and play important roles in
ocean biogeochemistry. In vent ecosystems such as hydrothermal plumes, microorganisms …
ocean biogeochemistry. In vent ecosystems such as hydrothermal plumes, microorganisms …
Towards a systems biology approach to understanding the lichen symbiosis: opportunities and challenges of implementing network modelling
Lichen associations, a classic model for successful and sustainable interactions between
micro-organisms, have been studied for many years. However, there are significant gaps in …
micro-organisms, have been studied for many years. However, there are significant gaps in …
Comparative analysis of metabolic models of microbial communities reconstructed from automated tools and consensus approaches
Genome-scale metabolic models (GEMs) of microbial communities offer valuable insights
into the functional capabilities of their members and facilitate the exploration of microbial …
into the functional capabilities of their members and facilitate the exploration of microbial …