A centimeter-long bacterium with DNA contained in metabolically active, membrane-bound organelles

JM Volland, S Gonzalez-Rizzo, O Gros, T Tyml… - Science, 2022 - science.org
Cells of most bacterial species are around 2 micrometers in length, with some of the largest
specimens reaching 750 micrometers. Using fluorescence, x-ray, and electron microscopy in …

Structure of the bacterial ribosome at 2 Å resolution

ZL Watson, FR Ward, R Méheust, O Ad, A Schepartz… - elife, 2020 - elifesciences.org
Using cryo-electron microscopy (cryo-EM), we determined the structure of the Escherichia
coli 70S ribosome with a global resolution of 2.0 Å. The maps reveal unambiguous …

Giant virus diversity and host interactions through global metagenomics

F Schulz, S Roux, D Paez-Espino, S Jungbluth… - Nature, 2020 - nature.com
Our current knowledge about nucleocytoplasmic large DNA viruses (NCLDVs) is largely
derived from viral isolates that are co-cultivated with protists and algae. Here we …

Phylogenetically and catabolically diverse diazotrophs reside in deep-sea cold seep sediments

X Dong, C Zhang, Y Peng, HX Zhang, LD Shi… - Nature …, 2022 - nature.com
Microbially mediated nitrogen cycling in carbon-dominated cold seep environments remains
poorly understood. So far anaerobic methanotrophic archaea (ANME-2) and their sulfate …

Phylogenomics and the evolution of hemipteroid insects

KP Johnson, CH Dietrich, F Friedrich… - Proceedings of the …, 2018 - National Acad Sciences
Hemipteroid insects (Paraneoptera), with over 10% of all known insect diversity, are a major
component of terrestrial and aquatic ecosystems. Previous phylogenetic analyses have not …

Fungal diversity notes 840–928: micro-fungi associated with Pandanaceae

S Tibpromma, KD Hyde, EHC McKenzie, DJ Bhat… - Fungal diversity, 2018 - Springer
This paper provides illustrated descriptions of micro-fungi newly found on Pandanaceae in
China and Thailand. The fungi are accommodated in 31 families. New taxa described …

Application of the MAFFT sequence alignment program to large data—reexamination of the usefulness of chained guide trees

KD Yamada, K Tomii, K Katoh - Bioinformatics, 2016 - academic.oup.com
Motivation: Large multiple sequence alignments (MSAs), consisting of thousands of
sequences, are becoming more and more common, due to advances in sequencing …

Bacterial secondary metabolite biosynthetic potential in soil varies with phylum, depth, and vegetation type

AM Sharrar, A Crits-Christoph, R Méheust, S Diamond… - MBio, 2020 - Am Soc Microbiol
Bacteria isolated from soils are major sources of specialized metabolites, including
antibiotics and other compounds with clinical value that likely shape interactions among …

Molecular phylogenetics: Concepts for a newcomer

P Ajawatanawong - Network Biology, 2017 - Springer
Molecular phylogenetics is the study of evolutionary relationships among organisms using
molecular sequence data. The aim of this review is to introduce the important terminology …

Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids

D Kazlauskas, A Varsani, EV Koonin… - Nature …, 2019 - nature.com
Single-stranded (ss) DNA viruses are a major component of the earth virome. In particular,
the circular, Rep-encoding ssDNA (CRESS-DNA) viruses show high diversity and …