[HTML][HTML] Origin, dynamics, and implications of extracellular DNA pools in marine sediments

A Torti, MA Lever, BB Jørgensen - Marine genomics, 2015 - Elsevier
In marine sediments, DNA occurs both inside and outside living organisms. DNA not
enclosed in living cells may account for the largest fraction of total DNA, and include …

Progress in forensic bone DNA analysis: Lessons learned from ancient DNA

M Hofreiter, J Sneberger, M Pospisek… - Forensic Science …, 2021 - Elsevier
Research on ancient and forensic DNA is related in many ways, and the two fields must deal
with similar obstacles. Therefore, communication between these two communities has the …

mapDamage: testing for damage patterns in ancient DNA sequences

A Ginolhac, M Rasmussen, MTP Gilbert… - …, 2011 - academic.oup.com
Ancient DNA extracts consist of a mixture of contaminant DNA molecules, most often
originating from environmental microbes, and endogenous fragments exhibiting substantial …

Critical factors for assembling a high volume of DNA barcodes

M Hajibabaei, JR DeWaard… - … of the Royal …, 2005 - royalsocietypublishing.org
Large-scale DNA barcoding projects are now moving toward activation while the creation of
a comprehensive barcode library for eukaryotes will ultimately require the acquisition of …

Quantification of damage in DNA recovered from highly degraded samples–a case study on DNA in faeces

BE Deagle, JP Eveson, SN Jarman - Frontiers in zoology, 2006 - Springer
Background Poorly preserved biological tissues have become an important source of DNA
for a wide range of zoological studies. Measuring the quality of DNA obtained from these …

Optimizing extraction and targeted capture of ancient environmental DNA for reconstructing past environments using the PalaeoChip Arctic-1.0 bait-set

TJ Murchie, M Kuch, AT Duggan, ML Ledger… - Quaternary …, 2021 - cambridge.org
Sedimentary ancient DNA (sedaDNA) has been established as a viable biomolecular proxy
for tracking taxon presence through time in a local environment, even in the total absence of …

Ancient DNA chronology within sediment deposits: are paleobiological reconstructions possible and is DNA leaching a factor?

J Haile, R Holdaway, K Oliver, M Bunce… - Molecular biology …, 2007 - academic.oup.com
In recent years, several studies have reported the successful extraction of ancient DNA
(aDNA) from both frozen and nonfrozen sediments (even in the absence of macrofossils) in …

Chain and conformation stability of solid-state DNA: implications for room temperature storage

J Bonnet, M Colotte, D Coudy, V Couallier… - Nucleic acids …, 2010 - academic.oup.com
There is currently wide interest in room temperature storage of dehydrated DNA. However,
there is insufficient knowledge about its chemical and structural stability. Here, we show that …

Using palaeoenvironmental DNA to reconstruct past environments: progress and prospects

NJ Rawlence, DJ Lowe, JR Wood… - Journal of …, 2014 - Wiley Online Library
Palaeoenvironmental DNA (PalEnDNA) is defined as ancient DNA (aDNA) originating from
disseminated genetic material within palaeoenvironmental samples. Sources of PalEnDNA …

DNA damage in preserved specimens and tissue samples: a molecular assessment

J Zimmermann, M Hajibabaei, DC Blackburn… - Frontiers in …, 2008 - Springer
The extraction of genetic information from preserved tissue samples or museum specimens
is a fundamental component of many fields of research, including the Barcode of Life …