Unsolved challenges of clinical whole-exome sequencing: a systematic literature review of end-users' views

G Bertier, M Hétu, Y Joly - BMC medical genomics, 2016 - Springer
Background Whole-exome sequencing (WES) consists in the capture, sequencing and
analysis of all exons in the human genome. Originally developed in the research context …

Novel applications of array comparative genomic hybridization in molecular diagnostics

SW Cheung, W Bi - Expert review of molecular diagnostics, 2018 - Taylor & Francis
Introduction: In 2004, the implementation of array comparative genomic hybridization (array
comparative genome hybridization [CGH]) into clinical practice marked a new milestone for …

Low-pass whole-genome sequencing in clinical cytogenetics: a validated approach

Z Dong, J Zhang, P Hu, H Chen, J Xu, Q Tian… - Genetics in …, 2016 - nature.com
Purpose: Chromosomal microarray analysis is the gold standard for copy-number variant
(CNV) detection in prenatal and postnatal diagnosis. We aimed to determine whether next …

[HTML][HTML] Low-pass genome sequencing versus chromosomal microarray analysis: implementation in prenatal diagnosis

H Wang, Z Dong, R Zhang, MHK Chau, Z Yang… - Genetics in …, 2020 - Elsevier
Purpose Emerging studies suggest that low-pass genome sequencing (GS) provides
additional diagnostic yield of clinically significant copy-number variants (CNVs) compared …

WisecondorX: improved copy number detection for routine shallow whole-genome sequencing

L Raman, A Dheedene, M De Smet… - Nucleic acids …, 2019 - academic.oup.com
Shallow whole-genome sequencing to infer copy number alterations (CNAs) in the human
genome is rapidly becoming the method par excellence for routine diagnostic use …

Evaluation of three read-depth based CNV detection tools using whole-exome sequencing data

R Yao, C Zhang, T Yu, N Li, X Hu, X Wang, J Wang… - Molecular …, 2017 - Springer
Background Whole exome sequencing (WES) has been widely accepted as a robust and
cost-effective approach for clinical genetic testing of small sequence variants. Detection of …

Whole-genome sequencing analysis of CNV using low-coverage and paired-end strategies is efficient and outperforms array-based CNV analysis

B Zhou, SS Ho, X Zhang, R Pattni… - Journal of medical …, 2018 - jmg.bmj.com
Background Copy number variation (CNV) analysis is an integral component of the study of
human genomes in both research and clinical settings. Array-based CNV analysis is the …

Prospective chromosome analysis of 3429 amniocentesis samples in China using copy number variation sequencing

J Wang, L Chen, C Zhou, LI Wang, H Xie, Y Xiao… - American journal of …, 2018 - Elsevier
Background Next-generation sequencing is emerging as a viable alternative to chromosome
microarray analysis for the diagnosis of chromosome disease syndromes. One next …

Identification of copy number variations associated with congenital heart disease by chromosomal microarray analysis and next‐generation sequencing

X Zhu, J Li, T Ru, Y Wang, Y Xu, Y Yang… - Prenatal …, 2016 - Wiley Online Library
Objective To determine the type and frequency of pathogenic chromosomal abnormalities in
fetuses diagnosed with congenital heart disease (CHD) using chromosomal microarray …

[HTML][HTML] Low-pass genome sequencing: validation and diagnostic utility from 409 clinical cases of low-pass genome sequencing for the detection of copy number …

A Chaubey, S Shenoy, A Mathur, Z Ma… - The Journal of Molecular …, 2020 - Elsevier
DNA copy number variants (CNVs) account for approximately 300 Mb of sequence variation
in the normal human genome. Significant numbers of pathogenic CNVs contribute toward …