Exploring free-energy landscapes of intrinsically disordered proteins at atomic resolution using NMR spectroscopy

MR Jensen, M Zweckstetter, J Huang… - Chemical …, 2014 - ACS Publications
The last 15 years have seen a paradigm shift in our understanding of protein biochemistry,
with the realization that an unexpectedly high fraction of the human genome codes for …

Describing sequence–ensemble relationships for intrinsically disordered proteins

AH Mao, N Lyle, RV Pappu - Biochemical Journal, 2013 - portlandpress.com
Intrinsically disordered proteins participate in important protein–protein and protein–nucleic
acid interactions and control cellular phenotypes through their prominence as dynamic …

Identification of dynamic modes in an intrinsically disordered protein using temperature-dependent NMR relaxation

A Abyzov, N Salvi, R Schneider, D Maurin… - Journal of the …, 2016 - ACS Publications
The dynamic modes and time scales sampled by intrinsically disordered proteins (IDPs)
define their function. Nuclear magnetic resonance (NMR) spin relaxation is probably the …

NMR provides unique insight into the functional dynamics and interactions of intrinsically disordered proteins

AR Camacho-Zarco, V Schnapka, S Guseva… - Chemical …, 2022 - ACS Publications
Intrinsically disordered proteins are ubiquitous throughout all known proteomes, playing
essential roles in all aspects of cellular and extracellular biochemistry. To understand their …

Characterization of intrinsically disordered proteins and their dynamic complexes: From in vitro to cell-like environments

S Milles, N Salvi, M Blackledge, MR Jensen - Progress in nuclear magnetic …, 2018 - Elsevier
Over the last two decades, it has become increasingly clear that a large fraction of the
human proteome is intrinsically disordered or contains disordered segments of significant …

Conformational propensities of intrinsically disordered proteins from NMR chemical shifts

J Kragelj, V Ozenne, M Blackledge… - …, 2013 - Wiley Online Library
The realization that a protein can be fully functional even in the absence of a stable three‐
dimensional structure has motivated a large number of studies describing the …

A maximum entropy approach to the study of residue‐specific backbone angle distributions in α‐synuclein, an intrinsically disordered protein

AB Mantsyzov, AS Maltsev, J Ying, Y Shen… - Protein …, 2014 - Wiley Online Library
Abstract α‐Synuclein is an intrinsically disordered protein of 140 residues that switches to an
α‐helical conformation upon binding phospholipid membranes. We characterize its residue …

Atomic resolution conformational dynamics of intrinsically disordered proteins from NMR spin relaxation

N Salvi, A Abyzov, M Blackledge - Progress in nuclear magnetic resonance …, 2017 - Elsevier
Nuclear magnetic resonance (NMR) spectroscopy is one of the most powerful experimental
approaches for investigating the conformational behaviour of intrinsically disordered …

Local order in the unfolded state: conformational biases and nearest neighbor interactions

S Toal, R Schweitzer-Stenner - Biomolecules, 2014 - mdpi.com
The discovery of Intrinsically Disordered Proteins, which contain significant levels of disorder
yet perform complex biologically functions, as well as unwanted aggregation, has motivated …

Secondary structure assignment for conformationally irregular peptides: Comparison between DSSP, STRIDE and KAKSI

Y Zhang, C Sagui - Journal of Molecular Graphics and Modelling, 2015 - Elsevier
Secondary structure assignment codes were built to explore the regularities associated with
the periodic motifs of proteins, such as those in backbone dihedral angles or in hydrogen …