So many variables: joint modeling in community ecology

DI Warton, FG Blanchet, RB O'Hara… - Trends in ecology & …, 2015 - cell.com
Technological advances have enabled a new class of multivariate models for ecology, with
the potential now to specify a statistical model for abundances jointly across many taxa, to …

An overview of modern applications of negative binomial modelling in ecology and biodiversity

J Stoklosa, RV Blakey, FKC Hui - Diversity, 2022 - mdpi.com
Negative binomial modelling is one of the most commonly used statistical tools for analysing
count data in ecology and biodiversity research. This is not surprising given the prevalence …

[图书][B] Joint species distribution modelling: With applications in R

O Ovaskainen, N Abrego - 2020 - books.google.com
Joint species distribution modelling (JSDM) is a fast-developing field and promises to
revolutionise how data on ecological communities are analysed and interpreted. Written for …

How to make more out of community data? A conceptual framework and its implementation as models and software

O Ovaskainen, G Tikhonov, A Norberg… - Ecology …, 2017 - Wiley Online Library
Community ecology aims to understand what factors determine the assembly and dynamics
of species assemblages at different spatiotemporal scales. To facilitate the integration …

boral – Bayesian Ordination and Regression Analysis of Multivariate Abundance Data in r

FKC Hui - Methods in Ecology and Evolution, 2016 - Wiley Online Library
Model‐based methods have emerged as a powerful approach for analysing multivariate
abundance data in community ecology. Key applications include model‐based ordination …

Generalized joint attribute modeling for biodiversity analysis: Median‐zero, multivariate, multifarious data

JS Clark, D Nemergut, B Seyednasrollah… - Ecological …, 2017 - Wiley Online Library
Probabilistic forecasts of species distribution and abundance require models that
accommodate the range of ecological data, including a joint distribution of multiple species …

gllvm: Fast analysis of multivariate abundance data with generalized linear latent variable models in r

J Niku, FKC Hui, S Taskinen… - Methods in Ecology and …, 2019 - Wiley Online Library
There has been rapid development in tools for multivariate analysis based on fully specified
statistical models or 'joint models'. One approach attracting a lot of attention is generalized …

Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes

M Bálint, M Bahram, AM Eren, K Faust… - FEMS microbiology …, 2016 - academic.oup.com
With high-throughput sequencing (HTS), we are able to explore the hidden world of
microscopic organisms to an unpre-cedented level. The fast development of molecular …

Uncovering hidden spatial structure in species communities with spatially explicit joint species distribution models

O Ovaskainen, DB Roy, R Fox… - Methods in Ecology …, 2016 - Wiley Online Library
Modern species distribution models account for spatial autocorrelation in order to obtain
unbiased statistical inference on the effects of covariates, to improve the model's predictive …

Estimating diversity in networked ecological communities

AD Willis, BD Martin - Biostatistics, 2022 - academic.oup.com
Comparing ecological communities across environmental gradients can be challenging,
especially when the number of different taxonomic groups in the communities is large. In this …