JNK signaling: regulation and functions based on complex protein-protein partnerships

A Zeke, M Misheva, A Reményi… - … and Molecular Biology …, 2016 - Am Soc Microbiol
The c-Jun N-terminal kinases (JNKs), as members of the mitogen-activated protein kinase
(MAPK) family, mediate eukaryotic cell responses to a wide range of abiotic and biotic stress …

Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation

K Van Roey, B Uyar, RJ Weatheritt, H Dinkel… - Chemical …, 2014 - ACS Publications
The eukaryotic cell is a bustling collection of macromolecules acting cooperatively to
mediate the functions required for cell viability. Specific, context-dependent and tightly …

SH3 domains: modules of protein–protein interactions

N Kurochkina, U Guha - Biophysical reviews, 2013 - Springer
Abstract Src homology 3 (SH3) domains are involved in the regulation of important cellular
pathways, such as cell proliferation, migration and cytoskeletal modifications. Recognition of …

[HTML][HTML] Plasticity of PDZ domains in ligand recognition and signaling

Y Ivarsson - FEBS letters, 2012 - Elsevier
The PDZ domain is a protein–protein interacting module that plays an important role in the
organization of signaling complexes. The recognition of short intrinsically disordered C …

Self-binding peptides: folding or binding?

C Yang, S Zhang, P He, C Wang… - Journal of Chemical …, 2015 - ACS Publications
Self-binding peptides (SBPs) represent those short peptide segments within monomeric
proteins to fulfill their biological functions by dynamically binding to/unbinding from their …

[HTML][HTML] The emerging contribution of sequence context to the specificity of protein interactions mediated by PDZ domains

K Luck, S Charbonnier, G Travé - FEBS letters, 2012 - Elsevier
The canonical binding mode of PDZ domains to target motifs involves a small interface,
unlikely to fully account for PDZ-target interaction specificities. Here, we review recent work …

A two-step binding mechanism for the self-binding peptide recognition of target domains

C Yang, S Zhang, Z Bai, S Hou, D Wu, J Huang… - Molecular …, 2016 - pubs.rsc.org
Self-binding peptides (SBPs) represent a novel biomolecular phenomenon spanning
between folding and binding, where a short peptide segment within a monomeric protein …

Use of host-like peptide motifs in viral proteins is a prevalent strategy in host-virus interactions

T Hagai, A Azia, MM Babu, R Andino - Cell reports, 2014 - cell.com
Viruses interact extensively with host proteins, but the mechanisms controlling these
interactions are not well understood. We present a comprehensive analysis of eukaryotic …

The switches. ELM resource: a compendium of conditional regulatory interaction interfaces

K Van Roey, H Dinkel, RJ Weatheritt, TJ Gibson… - Science …, 2013 - science.org
Short linear motifs (SLiMs) are protein interaction sites that play an important role in cell
regulation by controlling protein activity, localization, and local abundance. The functionality …

Peptide docking and structure-based characterization of peptide binding: from knowledge to know-how

N London, B Raveh, O Schueler-Furman - Current opinion in structural …, 2013 - Elsevier
Highlights•Accrual of peptide–protein complex structures allowed their detailed
characterization.•This has lead to rapid progress in peptide docking, based on diverse …