Where microbiology meets microengineering: design and applications of reporter bacteria

JR Van Der Meer, S Belkin - Nature Reviews Microbiology, 2010 - nature.com
Bacteria have long been the targets for genetic manipulation, but more recently they have
been synthetically designed to carry out specific tasks. Among the simplest of these tasks is …

Transcription factor-based biosensors in biotechnology: current state and future prospects

R Mahr, J Frunzke - Applied microbiology and biotechnology, 2016 - Springer
Living organisms have evolved a plethora of sensing systems for the intra-and extracellular
detection of small molecules, ions or physical parameters. Several recent studies have …

Engineering an allosteric transcription factor to respond to new ligands

ND Taylor, AS Garruss, R Moretti, S Chan, MA Arbing… - Nature …, 2016 - nature.com
Genetic regulatory proteins inducible by small molecules are useful synthetic biology tools
as sensors and switches. Bacterial allosteric transcription factors (aTFs) are a major class of …

Enabling tools for high-throughput detection of metabolites: metabolic engineering and directed evolution applications

JL Lin, JM Wagner, HS Alper - Biotechnology advances, 2017 - Elsevier
Abstract Within the Design-Build-Test Cycle for strain engineering, rapid product detection
and selection strategies remain challenging and limit overall throughput. Here we …

Tailor-made transcriptional biosensors for optimizing microbial cell factories

B De Paepe, G Peters, P Coussement… - Journal of Industrial …, 2017 - academic.oup.com
Monitoring cellular behavior and eventually properly adapting cellular processes is key to
handle the enormous complexity of today's metabolic engineering questions. Hence …

[HTML][HTML] Directed evolution of biofuel-responsive biosensors for automated optimization of branched-chain alcohol biosynthesis

MO Bahls, L Platz, G Morgado, GW Schmidt… - Metabolic …, 2022 - Elsevier
The biosynthesis of short-chain alcohols is a carbon-neutral alternative to petroleum-derived
production, but strain screening operations are encumbered by laborious analytics. Here …

Modular tuning engineering and versatile applications of genetically encoded biosensors

J Zhang, Q Pang, Q Wang, Q Qi… - Critical Reviews in …, 2022 - Taylor & Francis
Genetically encoded biosensors have a diverse range of detectable signals and potential
applications in many fields, including metabolism control and high-throughput screening …

[HTML][HTML] Mining logic gates in prokaryotic transcriptional regulation networks

R Silva-Rocha, V de Lorenzo - FEBS letters, 2008 - Elsevier
Prokaryotic transcriptional networks possess a large number of regulatory modules that
formally implement many of the logic gates that are typical of digital, Boolean circuits. Yet …

Chimeric LysR-type transcriptional biosensors for customizing ligand specificity profiles toward flavonoids

B De Paepe, J Maertens, B Vanholme… - ACS Synthetic …, 2018 - ACS Publications
Transcriptional biosensors enable key applications in both metabolic engineering and
synthetic biology. Due to nature's immense variety of metabolites, these applications require …

Recombinant bacteria for environmental release: what went wrong and what we have learnt from it

V De Lorenzo - Clinical Microbiology and Infection, 2009 - Wiley Online Library
From a biotechnological point of view, bacteria can be seen as either pathogens to target
with new drugs or as biocatalysts for large‐scale processes in industry, agriculture or the …