PhyberSIM: a tool for the generation of ground truth to evaluate brain fiber clustering algorithms

E Poo, JF Mangin, C Poupon, C Hernández… - Frontiers in …, 2024 - frontiersin.org
Diffusion Magnetic Resonance Imaging tractography is a non-invasive technique that
produces a collection of streamlines representing the main white matter bundle trajectories …

[HTML][HTML] Horizon, closing the gap between cinematic visualization and medical imaging

J Guaje, S Koudoro, E Garyfallidis - medRxiv, 2023 - ncbi.nlm.nih.gov
Medical imaging has become a fascinating field with detailed visualizations of the body's
internal environments. Although the field has grown fast and is sensitive to new …

White matter tract segmentation as multiple linear assignment problems

N Sharmin, E Olivetti, P Avesani - Frontiers in Neuroscience, 2018 - frontiersin.org
Diffusion magnetic resonance imaging (dMRI) allows to reconstruct the main pathways of
axons within the white matter of the brain as a set of polylines, called streamlines. The set of …

[PDF][PDF] QuickBundlesX: sequential clustering of millions of streamlines in multiple levels of detail at record execution time

E Garyfallidis, MA Côté, F Rheault… - … International Society of …, 2016 - researchgate.net
QuickBundlesX shows a remarkable 20+ X speedup over it's predecessor who was until
today the fastest clustering algorithm for streamlines. In addition, it returns a useful tree of …

Horizon, closing the gap between cinematic visualization and medical imaging

J Guaje, S Koudoro, E Garyfallidis - medRxiv, 2023 - medrxiv.org
Medical imaging has become a fascinating field with detailed visualizations of the body's
internal environments. Although the field has grown fast and is sensitive to new …

Coresets vs clustering: comparison of methods for redundancy reduction in very large white matter fiber sets

G Alexandroni, GZ Moreno, N Sochen… - … Imaging 2016: Image …, 2016 - spiedigitallibrary.org
Recent advances in Diffusion Weighted Magnetic Resonance Imaging (DW-MRI) of white
matter in conjunction with improved tractography produce impressive reconstructions of …

The fiber-density-coreset for redundancy reduction in huge fiber-sets

G Alexandroni, GZ Moreno, N Sochen, H Greenspan - NeuroImage, 2017 - Elsevier
State of the art Diffusion Weighted Magnetic Resonance Imaging (DW-MRI) protocols of
white matter followed by advanced tractography techniques produce impressive …

Fast density-peaks clustering for registration-free pediatric white matter tract analysis

X Fan, Y Duan, S Cheng, Y Zhang, H Cheng - Artificial Intelligence in …, 2019 - Elsevier
Clustering white matter (WM) tracts from diffusion tensor imaging (DTI) is primarily important
for quantitative analysis on pediatric brain development. A recently developed algorithm …

Review of fast density-peaks clustering and its application to pediatric white matter tracts

S Cheng, Y Duan, X Fan, D Zhang, H Cheng - … Image Understanding and …, 2017 - Springer
Clustering white matter (WM) tracts from diffusion tensor imaging (DTI) is primarily important
for quantitative analysis on pediatric brain development. A recently developed algorithm …

3D-SSF: A bio-inspired approach for dynamic multi-subject clustering of white matter tracts

A Chekir, S Hassas, M Descoteaux, M Côté… - Computers in Biology …, 2017 - Elsevier
There is growing interest in the study of white matter (WM) variation across subjects, and in
particular the analysis of specific WM bundles, to better understand brain development and …