The cell cycle, cancer development and therapy

E Jamasbi, M Hamelian, MA Hossain… - Molecular biology reports, 2022 - Springer
The process of cell division plays a vital role in cancer progression. Cell proliferation and
error-free chromosomes segregation during mitosis are central events in life cycle. Mistakes …

Chromosome inequality: causes and consequences of non-random segregation errors in mitosis and meiosis

SJ Klaasen, GJPL Kops - Cells, 2022 - mdpi.com
Aneuploidy is a hallmark of cancer and a major cause of miscarriages in humans. It is
caused by chromosome segregation errors during cell divisions. Evidence is mounting that …

[HTML][HTML] Distinct classes of complex structural variation uncovered across thousands of cancer genome graphs

K Hadi, X Yao, JM Behr, A Deshpande… - Cell, 2020 - cell.com
Cancer genomes often harbor hundreds of somatic DNA rearrangement junctions, many of
which cannot be easily classified into simple (eg, deletion) or complex (eg, chromothripsis) …

[HTML][HTML] Genetic and epigenetic characteristics of inflammatory bowel Disease–Associated colorectal cancer

K Rajamäki, A Taira, R Katainen, N Välimäki… - Gastroenterology, 2021 - Elsevier
Background & Aims Inflammatory bowel disease (IBD) is a chronic, relapsing inflammatory
disorder associated with an elevated risk of colorectal cancer (CRC). IBD-associated CRC …

An extended APOBEC3A mutation signature in cancer

A Langenbucher, D Bowen, R Sakhtemani… - Nature …, 2021 - nature.com
APOBEC mutagenesis, a major driver of cancer evolution, is known for targeting TpC sites in
DNA. Recently, we showed that APOBEC3A (A3A) targets DNA hairpin loops. Here, we …

Whole genomic analysis reveals atypical non-homologous off-target large structural variants induced by CRISPR-Cas9-mediated genome editing

HH Tsai, HJ Kao, MW Kuo, CH Lin, CM Chang… - Nature …, 2023 - nature.com
CRISPR-Cas9 genome editing has promising therapeutic potential for genetic diseases and
cancers, but safety could be a concern. Here we use whole genomic analysis by 10x linked …

Starfish infers signatures of complex genomic rearrangements across human cancers

L Bao, X Zhong, Y Yang, L Yang - Nature cancer, 2022 - nature.com
Complex genomic rearrangements (CGRs) are common in cancer and are known to form via
two aberrant cellular structures—micronuclei and chromatin bridges. However, which of …

Comprehensive analysis of neoantigens derived from structural variation across whole genomes from 2528 tumors

Y Shi, B Jing, R Xi - Genome biology, 2023 - Springer
Background Neoantigens are critical for anti-tumor immunity and have been long-
envisioned as promising therapeutic targets. However, current neoantigen analyses mostly …

Comprehensive molecular characterization identifies distinct genomic and immune hallmarks of renal medullary carcinoma

P Msaouel, GG Malouf, X Su, H Yao, DN Tripathi… - Cancer Cell, 2020 - cell.com
Renal medullary carcinoma (RMC) is a highly lethal malignancy that mainly afflicts young
individuals of African descent and is resistant to all targeted agents used to treat other renal …

RTEL1 suppresses G-quadruplex-associated R-loops at difficult-to-replicate loci in the human genome

W Wu, R Bhowmick, I Vogel, Ö Özer… - Nature structural & …, 2020 - nature.com
Oncogene activation during tumorigenesis generates DNA replication stress, a known driver
of genome rearrangements. In response to replication stress, certain loci, such as common …