The field of RNA structure prediction has experienced significant advances in the past
several years, thanks to the availability of new experimental data and improved …

In today's research environment, a wealth of experimental/theoretical structural data is
available and the number of therapeutically relevant macromolecular structures is growing …

Bean golden mosaic virus (BGMV) is transmitted by the whitefly Bemisia tabaci in a
persistent, circulative manner, causing the golden mosaic of common bean (Phaseolus …

The Kinefold web server provides a web interface for stochastic folding simulations of
nucleic acids on second to minute molecular time scales. Renaturation or co-transcriptional …

We present a novel topological classification of RNA secondary structures with pseudoknots.
It is based on the topological genus of the circular diagram associated to the RNA base-pair …

ABSTRACT The 5′ untranslated regions (UTRs) of the RNA genomes of Flaviviridae of the
Hepacivirus and Pestivirus genera contain internal ribosomal entry sites (IRESs) that are …

We present a machine learning method (a hierarchical network of k-nearest neighbor
classifiers) that uses an RNA sequence alignment in order to predict a consensus RNA …

RNA biology has risen to prominence after a remarkable discovery of diverse functions of
noncoding RNA (ncRNA). Most untranslated transcripts often exert their regulatory functions …

Non protein-coding RNAs (ncRNAs) are a research hotspot in bioinformatics. Recent
discoveries have revealed new ncRNA families performing a variety of roles, from gene …

Self-cleaving RNAs have recently been identified in mammalian genomes. A small ribozyme
related in structure to the hepatitis delta virus (HDV) ribozyme occurs in a number of …