Text-mining solutions for biomedical research: enabling integrative biology

D Rebholz-Schuhmann, A Oellrich… - Nature Reviews …, 2012 - nature.com
In response to the unbridled growth of information in literature and biomedical databases,
researchers require efficient means of handling and extracting information. As well as …

Advances in omics and bioinformatics tools for systems analyses of plant functions

K Mochida, K Shinozaki - Plant and Cell Physiology, 2011 - academic.oup.com
Omics and bioinformatics are essential to understanding the molecular systems that underlie
various plant functions. Recent game-changing sequencing technologies have revitalized …

ChemSpot: a hybrid system for chemical named entity recognition

T Rocktäschel, M Weidlich, U Leser - Bioinformatics, 2012 - academic.oup.com
Motivation: The accurate identification of chemicals in text is important for many applications,
including computer-assisted reconstruction of metabolic networks or retrieval of information …

[HTML][HTML] BioC: a minimalist approach to interoperability for biomedical text processing

DC Comeau, R Islamaj Doğan, P Ciccarese… - Database, 2013 - academic.oup.com
A vast amount of scientific information is encoded in natural language text, and the quantity
of such text has become so great that it is no longer economically feasible to have a human …

[图书][B] Healthcare data analytics

CK Reddy, CC Aggarwal - 2015 - books.google.com
Supplying a comprehensive overview of healthcare analytics research, Healthcare Data
Analytics provides an understanding of the analytical techniques currently available to solve …

Event extraction for systems biology by text mining the literature

S Ananiadou, S Pyysalo, J Tsujii, DB Kell - Trends in biotechnology, 2010 - cell.com
Systems biology recognizes in particular the importance of interactions between biological
components and the consequences of these interactions. Such interactions and their …

[PDF][PDF] Biomedical named entity recognition based on deep neutral network

L Yao, H Liu, Y Liu, X Li, MW Anwar - Int. J. Hybrid Inf. Technol, 2015 - gvpress.com
Many machine learning methods have been applied on the biomedical named entity
recognition and achieve good results on GENIA corpus. However most of those methods …

Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications

T Clark, PN Ciccarese, CA Goble - Journal of biomedical semantics, 2014 - Springer
Background Scientific publications are documentary representations of defeasible
arguments, supported by data and repeatable methods. They are the essential mediating …

Biomedical text mining: a survey of recent progress

MS Simpson, D Demner-Fushman - Mining text data, 2012 - Springer
The biomedical community makes extensive use of text mining technology. In the past
several years, enormous progress has been made in developing tools and methods, and the …

Layout-aware text extraction from full-text PDF of scientific articles

C Ramakrishnan, A Patnia, E Hovy… - Source code for biology …, 2012 - Springer
Abstract Background The Portable Document Format (PDF) is the most commonly used file
format for online scientific publications. The absence of effective means to extract text from …