Mass-spectrometric exploration of proteome structure and function

R Aebersold, M Mann - Nature, 2016 - nature.com
Numerous biological processes are concurrently and coordinately active in every living cell.
Each of them encompasses synthetic, catalytic and regulatory functions that are, almost …

Mass spectrometry‐based protein–protein interaction networks for the study of human diseases

AL Richards, M Eckhardt, NJ Krogan - Molecular systems biology, 2021 - embopress.org
A better understanding of the molecular mechanisms underlying disease is key for
expediting the development of novel therapeutic interventions. Disease mechanisms are …

Failure of human rhombic lip differentiation underlies medulloblastoma formation

LD Hendrikse, P Haldipur, O Saulnier, J Millman… - Nature, 2022 - nature.com
Medulloblastoma (MB) comprises a group of heterogeneous paediatric embryonal
neoplasms of the hindbrain with strong links to early development of the hindbrain 1, 2, 3, 4 …

The shieldin complex mediates 53BP1-dependent DNA repair

SM Noordermeer, S Adam, D Setiaputra, M Barazas… - Nature, 2018 - nature.com
Abstract 53BP1 is a chromatin-binding protein that regulates the repair of DNA double-
strand breaks by suppressing the nucleolytic resection of DNA termini,. This function of …

MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry–based proteomics

AT Kong, FV Leprevost, DM Avtonomov… - Nature …, 2017 - nature.com
There is a need to better understand and handle the'dark matter'of proteomics—the vast
diversity of post-translational and chemical modifications that are unaccounted in a typical …

C9orf72 dipeptide repeats impair the assembly, dynamics, and function of membrane-less organelles

KH Lee, P Zhang, HJ Kim, DM Mitrea, M Sarkar… - Cell, 2016 - cell.com
Expansion of a hexanucleotide repeat GGGGCC (G 4 C 2) in C9ORF72 is the most common
cause of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). Transcripts …

Phosphorylated tau interactome in the human Alzheimer's disease brain

E Drummond, G Pires, C MacMurray, M Askenazi… - Brain, 2020 - academic.oup.com
Accumulation of phosphorylated tau is a key pathological feature of Alzheimer's disease.
Phosphorylated tau accumulation causes synaptic impairment, neuronal dysfunction and …

Transcriptomic taxonomy and neurogenic trajectories of adult human, macaque, and pig hippocampal and entorhinal cells

D Franjic, M Skarica, S Ma, JI Arellano… - Neuron, 2022 - cell.com
The hippocampal-entorhinal system supports cognitive functions, has lifelong neurogenic
capabilities in many species, and is selectively vulnerable to Alzheimer's disease. To …

Robust, reproducible and quantitative analysis of thousands of proteomes by micro-flow LC–MS/MS

Y Bian, R Zheng, FP Bayer, C Wong, YC Chang… - Nature …, 2020 - nature.com
Nano-flow liquid chromatography tandem mass spectrometry (nano-flow LC–MS/MS) is the
mainstay in proteome research because of its excellent sensitivity but often comes at the …

Getting to know the neighborhood: using proximity-dependent biotinylation to characterize protein complexes and map organelles

AC Gingras, KT Abe, B Raught - Current opinion in chemical biology, 2019 - Elsevier
The use of proximity-dependent biotinylation approaches combined with mass spectrometry
(eg BioID and APEX) has revolutionized the study of protein–protein interactions and …