Artificial intelligence to deep learning: machine intelligence approach for drug discovery

R Gupta, D Srivastava, M Sahu, S Tiwari, RK Ambasta… - Molecular …, 2021 - Springer
Drug designing and development is an important area of research for pharmaceutical
companies and chemical scientists. However, low efficacy, off-target delivery, time …

[HTML][HTML] Integration strategies of multi-omics data for machine learning analysis

M Picard, MP Scott-Boyer, A Bodein, O Périn… - Computational and …, 2021 - Elsevier
Increased availability of high-throughput technologies has generated an ever-growing
number of omics data that seek to portray many different but complementary biological …

Utilizing graph machine learning within drug discovery and development

T Gaudelet, B Day, AR Jamasb, J Soman… - Briefings in …, 2021 - academic.oup.com
Graph machine learning (GML) is receiving growing interest within the pharmaceutical and
biotechnology industries for its ability to model biomolecular structures, the functional …

Deep learning for drug repurposing: Methods, databases, and applications

X Pan, X Lin, D Cao, X Zeng, PS Yu… - Wiley …, 2022 - Wiley Online Library
Drug development is time‐consuming and expensive. Repurposing existing drugs for new
therapies is an attractive solution that accelerates drug development at reduced …

Graph neural network approaches for drug-target interactions

Z Zhang, L Chen, F Zhong, D Wang, J Jiang… - Current Opinion in …, 2022 - Elsevier
Developing new drugs remains prohibitively expensive, time-consuming, and often involves
safety issues. Accurate prediction of drug-target interactions (DTIs) can guide the drug …

Biomedical knowledge graph learning for drug repurposing by extending guilt-by-association to multiple layers

D Bang, S Lim, S Lee, S Kim - Nature Communications, 2023 - nature.com
Computational drug repurposing aims to identify new indications for existing drugs by
utilizing high-throughput data, often in the form of biomedical knowledge graphs. However …

Fusing higher and lower-order biological information for drug repositioning via graph representation learning

BW Zhao, L Wang, PW Hu, L Wong… - … on Emerging Topics …, 2023 - ieeexplore.ieee.org
Drug repositioning is a promising drug development technique to identify new indications for
existing drugs. However, existing computational models only make use of lower-order …

MVGCN: data integration through multi-view graph convolutional network for predicting links in biomedical bipartite networks

H Fu, F Huang, X Liu, Y Qiu, W Zhang - Bioinformatics, 2022 - academic.oup.com
Motivation There are various interaction/association bipartite networks in biomolecular
systems. Identifying unobserved links in biomedical bipartite networks helps to understand …

IEA-GNN: Anchor-aware graph neural network fused with information entropy for node classification and link prediction

P Zhang, J Chen, C Che, L Zhang, B Jin, Y Zhu - Information Sciences, 2023 - Elsevier
Graph neural networks are essential in mining complex relationships in graphs. However,
most methods ignore the global location information of nodes and the discrepancy between …

Graph neural networks designed for different graph types: A survey

JM Thomas, A Moallemy-Oureh… - arXiv preprint arXiv …, 2022 - arxiv.org
Graphs are ubiquitous in nature and can therefore serve as models for many practical but
also theoretical problems. For this purpose, they can be defined as many different types …