Metaproteome and metabolome of oral microbial communities

N Bostanci, M Grant, K Bao, A Silbereisen… - Periodontology …, 2021 - Wiley Online Library
The emergence of high‐throughput technologies for the comprehensive measurement of
biomolecules, also referred to as “omics” technologies, has helped us gather “big data” and …

Metaproteomic and metabolomic approaches for characterizing the gut microbiome

DL Peters, W Wang, X Zhang, Z Ning, J Mayne… - …, 2019 - Wiley Online Library
The gut microbiome has been shown to play a significant role in human healthy and
diseased states. The dynamic signaling that occurs between the host and microbiome is …

Microbial differences between dental plaque and historic dental calculus are related to oral biofilm maturation stage

IM Velsko, JA Fellows Yates, F Aron, RW Hagan… - Microbiome, 2019 - Springer
Background Dental calculus, calcified oral plaque biofilm, contains microbial and host
biomolecules that can be used to study historic microbiome communities and host …

Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic

M Klapper, A Hübner, A Ibrahim, I Wasmuth, M Borry… - Science, 2023 - science.org
Major advances over the past decade in the field of ancient DNA are providing access to
past paleogenomic diversity, but the diverse functions and biosynthetic capabilities of this …

Ancient dental calculus reveals oral microbiome shifts associated with lifestyle and disease in Great Britain

AS Gancz, AG Farrer, MP Nixon, S Wright… - Nature …, 2023 - nature.com
The prevalence of chronic, non-communicable diseases has risen sharply in recent
decades, especially in industrialized countries. While several studies implicate the …

LipiDex: an integrated software package for high-confidence lipid identification

PD Hutchins, JD Russell, JJ Coon - Cell systems, 2018 - cell.com
State-of-the-art proteomics software routinely quantifies thousands of peptides per
experiment with minimal need for manual validation or processing of data. For the emerging …

Differential preservation of endogenous human and microbial DNA in dental calculus and dentin

AE Mann, S Sabin, K Ziesemer, ÅJ Vågene… - Scientific reports, 2018 - nature.com
Dental calculus (calcified dental plaque) is prevalent in archaeological skeletal collections
and is a rich source of oral microbiome and host-derived ancient biomolecules. Recently, it …

Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter

L Granehäll, KD Huang, A Tett, P Manghi, A Paladin… - Microbiome, 2021 - Springer
Background Dental calculus (mineralised dental plaque) preserves many types of
microfossils and biomolecules, including microbial and host DNA, and ancient calculus are …

Multi-omic detection of Mycobacterium leprae in archaeological human dental calculus

AK Fotakis, SD Denham, M Mackie… - … of the Royal …, 2020 - royalsocietypublishing.org
Mineralized dental plaque (calculus) has proven to be an excellent source of ancient
biomolecules. Here we present a Mycobacterium leprae genome (6.6-fold), the causative …

Novel substrates as sources of ancient DNA: prospects and hurdles

EJ Green, CF Speller - Genes, 2017 - mdpi.com
Following the discovery in the late 1980s that hard tissues such as bones and teeth preserve
genetic information, the field of ancient DNA analysis has typically concentrated upon these …