[HTML][HTML] Segmentation in large-scale cellular electron microscopy with deep learning: A literature survey

A Aswath, A Alsahaf, BNG Giepmans… - Medical image analysis, 2023 - Elsevier
Electron microscopy (EM) enables high-resolution imaging of tissues and cells based on 2D
and 3D imaging techniques. Due to the laborious and time-consuming nature of manual …

Deep neural network automated segmentation of cellular structures in volume electron microscopy

B Gallusser, G Maltese, G Di Caprio… - Journal of Cell …, 2022 - rupress.org
Volume electron microscopy is an important imaging modality in contemporary cell biology.
Identification of intracellular structures is a laborious process limiting the effective use of this …

Digital biology approach for macroscale studies of biofilm growth and biocide effects with electron microscopy

KS Kozlov, DA Boiko, EV Detusheva, KV Detushev… - Digital …, 2023 - pubs.rsc.org
Microbial interactions are one of the major topics of current research due to their great
societal relevance. It is now established that biofilms—associations of microorganisms …

MADR-Net: multi-level attention dilated residual neural network for segmentation of medical images

K Balraj, M Ramteke, S Mittal, R Bhargava… - Scientific Reports, 2024 - nature.com
Medical image segmentation has made a significant contribution towards delivering
affordable healthcare by facilitating the automatic identification of anatomical structures and …

Machine learning-based 3D segmentation of mitochondria in polarized epithelial cells

NW Hultgren, T Zhou, DS Williams - Mitochondrion, 2024 - Elsevier
Mitochondria are dynamic organelles that alter their morphological characteristics in
response to functional needs. Therefore, mitochondrial morphology is an important indicator …

[HTML][HTML] Evaluation of depth perception in crowded volumes

Ž Lesar, C Bohak, M Marolt - Computers & Graphics, 2024 - Elsevier
Depth perception in volumetric visualization plays a crucial role in the understanding and
interpretation of volumetric data. Numerous visualization techniques, many of which rely on …

Dr. KID: Direct Remeshing and K-set Isometric Decomposition for Scalable Physicalization of Organic Shapes

D Khan, C Bohak, I Viola - IEEE transactions on visualization …, 2023 - ieeexplore.ieee.org
Dr. KID is an algorithm that uses isometric decomposition for the physicalization of potato-
shaped organic models in a puzzle fashion. The algorithm begins with creating a simple …