Quantum biology: An update and perspective

Y Kim, F Bertagna, EM D'souza, DJ Heyes… - Quantum …, 2021 - mdpi.com
Understanding the rules of life is one of the most important scientific endeavours and has
revolutionised both biology and biotechnology. Remarkable advances in observation …

Computational design of synthetic enzymes

V Vaissier Welborn, T Head-Gordon - Chemical reviews, 2018 - ACS Publications
We review the standard model for de novo computational design of enzymes, which
primarily focuses on the development of an active-site geometry, composed of protein …

[图书][B] Lifespan: why we age—and why we don't have to

DA Sinclair, MD LaPlante - 2019 - books.google.com
A NEW YORK TIMES BESTSELLER “Brilliant and enthralling.”​—The Wall Street Journal A
paradigm-shifting book from an acclaimed Harvard Medical School scientist and one of …

Protein flexibility and stiffness enable efficient enzymatic catalysis

JP Richard - Journal of the American Chemical Society, 2019 - ACS Publications
The enormous rate accelerations observed for many enzyme catalysts are due to strong
stabilizing interactions between the protein and reaction transition state. The defining …

Enabling role of ligand-driven conformational changes in enzyme evolution

JP Richard - Biochemistry, 2022 - ACS Publications
Many enzymes that show a large specificity in binding the enzymatic transition state with a
higher affinity than the substrate utilize substrate binding energy to drive protein …

Decoupling of catalysis and transition state analog binding from mutations throughout a phosphatase revealed by high-throughput enzymology

CJ Markin, DA Mokhtari, S Du… - Proceedings of the …, 2023 - National Acad Sciences
Using high-throughput microfluidic enzyme kinetics (HT-MEK), we measured over 9,000
inhibition curves detailing impacts of 1,004 single-site mutations throughout the alkaline …

Substrate Turnover Dynamics Guide Ketol-Acid Reductoisomerase Redesign for Increased Specific Activity

E Karvelis, C Swanson, B Tidor - ACS catalysis, 2024 - ACS Publications
The task of adapting enzymes for specific applications is often hampered by our incomplete
ability to tune and tailor catalytic functions, particularly when seeking increased activity …

Assessment of enzyme active site positioning and tests of catalytic mechanisms through X-ray–derived conformational ensembles

F Yabukarski, JT Biel, MM Pinney… - Proceedings of the …, 2020 - National Acad Sciences
How enzymes achieve their enormous rate enhancements remains a central question in
biology, and our understanding to date has impacted drug development, influenced enzyme …

Geometry of charge density as a reporter on the role of the protein scaffold in enzymatic catalysis: Electrostatic preorganization and beyond

ME Eberhart, TR Wilson, NW Johnston… - Journal of Chemical …, 2022 - ACS Publications
Enzymes host active sites inside protein macromolecules, which have diverse, often
incredibly complex, and atom-expensive structures. It is an outstanding question what the …

Enzyme dynamics: Looking beyond a single structure

PK Agarwal, DN Bernard, K Bafna, N Doucet - ChemCatChem, 2020 - Wiley Online Library
Conventional understanding of how enzymes function strongly emphasizes the role of
structure. However, increasing evidence clearly indicates that enzymes do not remain fixed …