Accelerating crop genetic gains with genomic selection

KP Voss-Fels, M Cooper, BJ Hayes - Theoretical and Applied Genetics, 2019 - Springer
Key message Genomic prediction based on additive genetic effects can accelerate genetic
gain. There are opportunities for further improvement by including non-additive effects that …

Doubling down on genomes: polyploidy and crop plants

S Renny‐Byfield, JF Wendel - American journal of botany, 2014 - Wiley Online Library
Polyploidy, or whole genome multiplication, is ubiquitous among angiosperms. Many crop
species are relatively recent allopolyploids, resulting from interspecific hybridization and …

QTL‐seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

H Takagi, A Abe, K Yoshida, S Kosugi… - The Plant …, 2013 - Wiley Online Library
The majority of agronomically important crop traits are quantitative, meaning that they are
controlled by multiple genes each with a small effect (quantitative trait loci, QTL s). Mapping …

Toward the sequence-based breeding in legumes in the post-genome sequencing era

RK Varshney, MK Pandey, A Bohra, VK Singh… - Theoretical and Applied …, 2019 - Springer
Efficiency of breeding programs of legume crops such as chickpea, pigeonpea and
groundnut has been considerably improved over the past decade through deployment of …

Bulked sample analysis in genetics, genomics and crop improvement

C Zou, P Wang, Y Xu - Plant biotechnology journal, 2016 - Wiley Online Library
Biological assay has been based on analysis of all individuals collected from sample
populations. Bulked sample analysis (BSA), which works with selected and pooled …

Discovery of stripe rust resistance with incomplete dominance in wild emmer wheat using bulked segregant analysis sequencing

V Klymiuk, HS Chawla, K Wiebe, J Ens… - Communications …, 2022 - nature.com
Durable crop disease resistance is an essential component of global food security.
Continuous pathogen evolution leads to a breakdown of resistance and there is a pressing …

Fine mapping and gene cloning in the post-NGS era: advances and prospects

D Jaganathan, A Bohra, M Thudi… - Theoretical and Applied …, 2020 - Springer
Improvement in traits of agronomic importance is the top breeding priority of crop
improvement programs. Majority of these agronomic traits show complex quantitative …

A rare single nucleotide variant in Pm5e confers powdery mildew resistance in common wheat

J Xie, G Guo, Y Wang, T Hu, L Wang, J Li… - New …, 2020 - Wiley Online Library
Powdery mildew poses severe threats to wheat production. The most sustainable way to
control this disease is through planting resistant cultivars. We report the map‐based cloning …

Genotyping-by-sequencing in plants

S Deschamps, V Llaca, GD May - Biology, 2012 - mdpi.com
The advent of next-generation DNA sequencing (NGS) technologies has led to the
development of rapid genome-wide Single Nucleotide Polymorphism (SNP) detection …

Emerging genomic tools for legume breeding: current status and future prospects

MK Pandey, M Roorkiwal, VK Singh… - Frontiers in Plant …, 2016 - frontiersin.org
Legumes play a vital role in ensuring global nutritional food security and improving soil
quality through nitrogen fixation. Accelerated higher genetic gains is required to meet the …