[HTML][HTML] Regulatory RNAs in bacteria

LS Waters, G Storz - Cell, 2009 - cell.com
Bacteria possess numerous and diverse means of gene regulation using RNA molecules,
including mRNA leaders that affect expression in cis, small RNAs that bind to proteins or …

Base pairing small RNAs and their roles in global regulatory networks

CL Beisel, G Storz - FEMS microbiology reviews, 2010 - academic.oup.com
Bacteria use a range of RNA regulators collectively termed small RNAs (sRNAs) to help
respond to changes in the environment. Many sRNAs regulate their target mRNAs through …

Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments

U Ala, FA Karreth, C Bosia, A Pagnani… - Proceedings of the …, 2013 - National Acad Sciences
Competitive endogenous (ce) RNAs cross-regulate each other through sequestration of
shared microRNAs and form complex regulatory networks based on their microRNA …

A quasi-integral controller for adaptation of genetic modules to variable ribosome demand

HH Huang, Y Qian, D Del Vecchio - Nature communications, 2018 - nature.com
The behavior of genetic circuits is often poorly predictable. A gene's expression level is not
only determined by the intended regulators, but also affected by changes in ribosome …

[HTML][HTML] A 3′ external transcribed spacer in a tRNA transcript acts as a sponge for small RNAs to prevent transcriptional noise

D Lalaouna, MC Carrier, S Semsey, JS Brouard… - Molecular cell, 2015 - cell.com
During ribosomal and transfer RNA maturation, external transcribed spacer (ETS) and
internal transcribed spacer (ITS) sequences are excised and, as non-functional by-products …

A quantitative comparison of sRNA‐based and protein‐based gene regulation

P Mehta, S Goyal, NS Wingreen - Molecular systems biology, 2008 - embopress.org
Small non‐coding RNAs (sRNAs) have important functions as genetic regulators in
prokaryotes. sRNAs act post‐transcriptionally through complementary pairing with target …

Bacterial transcriptomics: what is beyond the RNA horiz-ome?

M Güell, E Yus, M Lluch-Senar, L Serrano - Nature Reviews …, 2011 - nature.com
Over the past 3 years, bacterial transcriptomics has undergone a massive revolution.
Increased sequencing capacity and novel tools have made it possible to explore the …

Redox cofactor engineering in industrial microorganisms: strategies, recent applications and future directions

J Liu, H Li, G Zhao, Q Caiyin… - Journal of Industrial …, 2018 - academic.oup.com
NAD and NADP, a pivotal class of cofactors, which function as essential electron donors or
acceptors in all biological organisms, drive considerable catabolic and anabolic reactions …

Modelling competing endogenous RNA networks

C Bosia, A Pagnani, R Zecchina - PloS one, 2013 - journals.plos.org
MicroRNAs (miRNAs) are small RNA molecules, about 22 nucleotide long, which post-
transcriptionally regulate their target messenger RNAs (mRNAs). They accomplish key roles …

Small RNAs establish gene expression thresholds

E Levine, T Hwa - Current opinion in microbiology, 2008 - Elsevier
The central role of small RNAs in regulating bacterial gene expression has been elucidated
in the past years. Typically, small RNAs act via specific basepairing with target mRNAs …