Quorum sensing for population-level control of bacteria and potential therapeutic applications

S Wu, J Liu, C Liu, A Yang, J Qiao - Cellular and Molecular Life Sciences, 2020 - Springer
Quorum sensing (QS), a microbial cell-to-cell communication process, dynamically regulates
a variety of metabolism and physiological activities. In this review, we provide an update on …

[HTML][HTML] ClpXP, an ATP-powered unfolding and protein-degradation machine

TA Baker, RT Sauer - Biochimica et Biophysica Acta (BBA)-Molecular Cell …, 2012 - Elsevier
ClpXP is a AAA+ protease that uses the energy of ATP binding and hydrolysis to perform
mechanical work during targeted protein degradation within cells. ClpXP consists of …

An E. coli Cell-Free Expression Toolbox: Application to Synthetic Gene Circuits and Artificial Cells

J Shin, V Noireaux - ACS synthetic biology, 2012 - ACS Publications
Cell-free protein synthesis is becoming a powerful technique to construct and to study
complex informational processes in vitro. Engineering synthetic gene circuits in a test tube …

AAA+ superfamily ATPases: common structure–diverse function

T Ogura, AJ Wilkinson - Genes to Cells, 2001 - Wiley Online Library
The AAA+ superfamily of ATPases, which contain a homologous ATPase module, are found
in all kingdoms of living organisms where they participate in diverse cellular processes …

Delay-induced stochastic oscillations in gene regulation

D Bratsun, D Volfson, LS Tsimring… - Proceedings of the …, 2005 - National Acad Sciences
The small number of reactant molecules involved in gene regulation can lead to significant
fluctuations in intracellular mRNA and protein concentrations, and there have been …

Segregation of molecules at cell division reveals native protein localization

D Landgraf, B Okumus, P Chien, TA Baker… - Nature methods, 2012 - nature.com
We introduce a nonintrusive method exploiting single-cell variability after cell division to
validate protein localization. We found that Clp proteases, widely reported to form …

A bacterial toxin inhibits DNA replication elongation through a direct interaction with the β sliding clamp

CD Aakre, TN Phung, D Huang, MT Laub - Molecular cell, 2013 - cell.com
Toxin-antitoxin (TA) systems are ubiquitous on bacterial chromosomes, yet the mechanisms
regulating their activity and the molecular targets of toxins remain incompletely defined …

An unstructured initiation site is required for efficient proteasome-mediated degradation

S Prakash, L Tian, KS Ratliff, RE Lehotzky… - Nature structural & …, 2004 - nature.com
The proteasome is the main ATP-dependent protease in eukaryotic cells and controls the
concentration of many regulatory proteins in the cytosol and nucleus. Proteins are targeted …

Targeting proteins for degradation

EK Schrader, KG Harstad, A Matouschek - Nature chemical biology, 2009 - nature.com
Protein degradation plays a central role in many cellular functions. Misfolded and damaged
proteins are removed from the cell to avoid toxicity. The concentrations of regulatory proteins …

Regulated proteolysis in bacteria

SA Mahmoud, P Chien - Annual review of biochemistry, 2018 - annualreviews.org
Regulated proteolysis is a vital process that affects all living things. Bacteria use energy-
dependent AAA+ proteases to power degradation of misfolded and native regulatory …