Refinement of macromolecular structures by the maximum-likelihood method

GN Murshudov, AA Vagin… - … Section D: Biological …, 1997 - journals.iucr.org
This paper reviews the mathematical basis of maximum likelihood. The likelihood function
for macromolecular structures is extended to include prior phase information and …

[PDF][PDF] REFMAC5 for the refinement of macromolecular crystal structures

GN Murshudov, P Skubák, AA Lebedev… - … Section D: Biological …, 2011 - journals.iucr.org
This paper describes various components of the macromolecular crystallographic
refinement program REFMAC5, which is distributed as part of the CCP4 suite. REFMAC5 …

SIR2011: a new package for crystal structure determination and refinement

MC Burla, R Caliandro, M Camalli… - Journal of Applied …, 2012 - journals.iucr.org
SIR2011, the successor of SIR2004, is the latest program of the SIR suite. It can solve ab
initio crystal structures of small-and medium-size molecules, as well as protein structures …

[图书][B] Principles of protein X-ray crystallography

J Drenth - 2007 - books.google.com
X-ray crystallography is an established method for studying the structure of proteins and
other macromolecules. As the importance of proteins grows, researchers in many fields have …

Improved Fourier coefficients for maps using phases from partial structures with errors

RJ Read - Acta Crystallographica Section A: Foundations of …, 1986 - journals.iucr.org
Unrefined or partially refined models of macromolecules are generally incomplete and
typically have large coordinate errors. It is shown that phase probability equations …

Methods used in the structure determination of bovine mitochondrial F1 ATPase

JP Abrahams, AGW Leslie - Acta Crystallographica Section D …, 1996 - scripts.iucr.org
With a size of 372 kDa, the F1 ATPase particle is the largest asymmetric structure solved to
date. lsomorphous differences arising from reacting the crystals with methyl-mercury nitrate …

An analysis of conformational changes on protein–protein association: implications for predictive docking

MJ Betts, MJE Sternberg - Protein Engineering, 1999 - academic.oup.com
Conformational changes on complex formation have been measured for 39 pairs of
structures of complexed proteins and unbound equivalents, averaged over interface and …

Structure-factor probabilities for related structures

RJ Read - Acta Crystallographica Section A: Foundations of …, 1990 - journals.iucr.org
Probability relationships between structure factors from related structures have allowed
previously only for either differences in atomic scattering factors (isomorphous replacement …

[PDF][PDF] Facing the phase problem

WA Hendrickson - IUCrJ, 2023 - journals.iucr.org
The marvel of X-ray crystallography is the beauty and precision of the atomic structures
deduced from diffraction patterns. Since these patterns record only amplitudes, phases for …

[PDF][PDF] A log-likelihood-gain intensity target for crystallographic phasing that accounts for experimental error

RJ Read, AJ McCoy - Acta Crystallographica Section D: Structural …, 2016 - journals.iucr.org
The crystallographic diffraction experiment measures Bragg intensities; crystallographic
electron-density maps and other crystallographic calculations in phasing require structure …