[HTML][HTML] On the potential of machine learning to examine the relationship between sequence, structure, dynamics and function of intrinsically disordered proteins

K Lindorff-Larsen, BB Kragelund - Journal of Molecular Biology, 2021 - Elsevier
Intrinsically disordered proteins (IDPs) constitute a broad set of proteins with few uniting and
many diverging properties. IDPs—and intrinsically disordered regions (IDRs) interspersed …

Retinoic acid receptors in acute myeloid leukemia therapy

O di Martino, JS Welch - Cancers, 2019 - mdpi.com
Retinoic acid (RA) signaling pathways regulate fundamental biological processes, such as
cell proliferation, development, differentiation, and apoptosis. Retinoid receptors (RARs and …

Improving Martini 3 for disordered and multidomain proteins

FE Thomasen, F Pesce, MA Roesgaard… - Journal of Chemical …, 2022 - ACS Publications
Coarse-grained molecular dynamics simulations are a useful tool to determine
conformational ensembles of proteins. Here, we show that the coarse-grained force field …

Conformational buffering underlies functional selection in intrinsically disordered protein regions

NS Gonzalez-Foutel, J Glavina… - Nature structural & …, 2022 - nature.com
Many disordered proteins conserve essential functions in the face of extensive sequence
variation, making it challenging to identify the mechanisms responsible for functional …

[HTML][HTML] Improved predictions of phase behaviour of intrinsically disordered proteins by tuning the interaction range

G Tesei, K Lindorff-Larsen - Open Research Europe, 2022 - ncbi.nlm.nih.gov
The formation and viscoelastic properties of condensates of intrinsically disordered proteins
(IDPs) is dictated by amino acid sequence and solution conditions. Because of the …

Regulation of RXR-RAR heterodimers by RXR-and RAR-specific ligands and their combinations

A Le Maire, C Teyssier, P Balaguer, W Bourguet… - Cells, 2019 - mdpi.com
The three subtypes (α, β, and γ) of the retinoic acid receptor (RAR) are ligand-dependent
transcription factors that mediate retinoic acid signaling by forming heterodimers with the …

A coarse‐grained model for disordered and multi‐domain proteins

F Cao, S von Bülow, G Tesei… - Protein …, 2024 - Wiley Online Library
Many proteins contain more than one folded domain, and such modular multi‐domain
proteins help expand the functional repertoire of proteins. Because of their larger size and …

The role of vitamin A in non-ruminant immunology

Y Shastak, W Pelletier - Frontiers in Animal Science, 2023 - frontiersin.org
Vitamin A (retinol) is an essential micronutrient with a crucial role in the immune system of
non-ruminant animals, such as swine and poultry. It includes three chemical compounds …

The charged linker modulates the conformations and molecular interactions of Hsp90

A López, AR Elimelech, K Klimm, M Sattler - ChemBioChem, 2021 - Wiley Online Library
The molecular chaperone Hsp90 supports the functional activity of specific substrate
proteins (clients). For client processing, the Hsp90 dimer undergoes a series of ATP‐driven …

Polymethoxyflavones from citrus inhibited gastric cancer cell proliferation through inducing apoptosis by upregulating RARβ, both in vitro and in vivo

Y Wang, Y Chen, H Zhang, J Chen, J Cao… - Food and Chemical …, 2020 - Elsevier
In order to discover the active anti-tumor ingredients during the flavonoids separation
process of Ougan (Citrus reticulata cv. Suavissima), gastric cancer cell lines including AGS …