Computational models for active matter

MR Shaebani, A Wysocki, RG Winkler… - Nature Reviews …, 2020 - nature.com
Active matter, which ranges from molecular motors to groups of animals, exists at different
length scales and timescales, and various computational models have been proposed to …

Swimming in complex fluids

SE Spagnolie, PT Underhill - Annual Review of Condensed …, 2023 - annualreviews.org
We review the literature on swimming in complex fluids. A classification is proposed by
comparing the length-and timescales of a swimmer with those of nearby obstacles …

Holographic imaging reveals the mechanism of wall entrapment in swimming bacteria

S Bianchi, F Saglimbeni, R Di Leonardo - Physical Review X, 2017 - APS
Self-propelled particles, both biological and synthetic, are stably trapped by walls and
develop high concentration peaks over bounding surfaces. In swimming bacteria, like E. coli …

Films of bacteria at interfaces

L Vaccari, M Molaei, THR Niepa, D Lee… - Advances in colloid and …, 2017 - Elsevier
Bacteria are often discussed as active colloids, self-propelled organisms whose collective
motion can be studied in the context of non-equilibrium statistical mechanics. In such …

Hydrodynamic interaction of a self-propelling particle with a wall: Comparison between an active Janus particle and a squirmer model

Z Shen, A Würger, JS Lintuvuori - The European Physical Journal E, 2018 - Springer
Using lattice Boltzmann simulations we study the hydrodynamics of an active spherical
particle near a no-slip wall. We develop a computational model for an active Janus particle …

3D dynamics of bacteria wall entrapment at a water–air interface

S Bianchi, F Saglimbeni, G Frangipane… - Soft matter, 2019 - pubs.rsc.org
Swimming bacteria can be trapped for prolonged times at the surface of an impenetrable
boundary. The subsequent surface confined motility is found to be very sensitive to the …

Model microswimmers in channels with varying cross section

P Malgaretti, H Stark - The Journal of Chemical Physics, 2017 - pubs.aip.org
We study different types of microswimmers moving in channels with varying cross section
and thereby interacting hydrodynamically with the channel walls. Starting from the …

Swimming trajectories of a three-sphere microswimmer near a wall

A Daddi-Moussa-Ider, M Lisicki, C Hoell… - The Journal of chemical …, 2018 - pubs.aip.org
The hydrodynamic flow field generated by self-propelled active particles and swimming
microorganisms is strongly altered by the presence of nearby boundaries in a viscous flow …

Slippery rheotaxis: New regimes for guiding wall-bound microswimmers

S Ghosh, A Poddar - Journal of Fluid Mechanics, 2023 - cambridge.org
The near-surface locomotion of microswimmers under the action of background flows has
been studied extensively, whereas the intervening effects of complex surface properties …

Biofilms at interfaces: microbial distribution in floating films

N Desai, AM Ardekani - Soft Matter, 2020 - pubs.rsc.org
Cellular motility is a key function guiding microbial adhesion to interfaces, which is the first
step in the formation of biofilms. The close association of biofilms and bioremediation has …