Return of the Lemnaceae: duckweed as a model plant system in the genomics and postgenomics era

K Acosta, KJ Appenroth, L Borisjuk, M Edelman… - The Plant …, 2021 - academic.oup.com
The aquatic Lemnaceae family, commonly called duckweed, comprises some of the smallest
and fastest growing angiosperms known on Earth. Their tiny size, rapid growth by clonal …

The Arabidopsis holobiont: a (re) source of insights to understand the amazing world of plant–microbe interactions

MJ Poupin, T Ledger, R Roselló-Móra… - Environmental …, 2023 - Springer
As holobiont, a plant is intrinsically connected to its microbiomes. However, some
characteristics of these microbiomes, such as their taxonomic composition, biological and …

Detection of the Arabidopsis Proteome and Its Post-translational Modifications and the Nature of the Unobserved (Dark) Proteome in PeptideAtlas

KJ van Wijk, T Leppert, Z Sun, A Kearly… - Journal of proteome …, 2023 - ACS Publications
This study describes a new release of the Arabidopsis thaliana PeptideAtlas proteomics
resource (build 2023–10) providing protein sequence coverage, matched mass …

One hundred important questions for plant science–reflecting on a decade of plant research.

ER Larson, EM Armstrong, H Harper… - New …, 2023 - search.ebscohost.com
Keywords: adaptation; environment; plant diversity; plant science questions; societal
importance; species interactions EN adaptation environment plant diversity plant science …

Anno genominis XX: 20 years of Arabidopsis genomics

NJ Provart, SM Brady, G Parry, RJ Schmitz… - The Plant …, 2021 - academic.oup.com
Twenty years ago, the Arabidopsis thaliana genome sequence was published. This was an
important moment as it was the first sequenced plant genome and explicitly brought plant …

Mapping the Arabidopsis thaliana proteome in PeptideAtlas and the nature of the unobserved (dark) proteome; strategies towards a complete proteome

KJ van Wijk, T Leppert, Z Sun, A Kearly, M Li… - biorxiv, 2023 - biorxiv.org
This study describes a new release of the Arabidopsis thaliana PeptideAtlas proteomics
resource providing protein sequence coverage, matched mass spectrometry (MS) spectra …

Deciphering macromolecular interactions involved in abiotic stress signaling: A review of bioinformatics analysis

G Gouesbet - Plant abiotic stress signaling, 2023 - Springer
Plant functioning and responses to abiotic stresses largely involve regulations at the
transcriptomic level via complex interactions of signal molecules, signaling cascades, and …

DT-PICS: An efficient and cost-effective SNP selection method for the germplasm identification of Arabidopsis

L Xiong, Z Li, W Li, L Li - International Journal of Molecular Sciences, 2023 - mdpi.com
Germplasm identification is essential for plant breeding and conservation. In this study, we
developed a new method, DT-PICS, for efficient and cost-effective SNP selection in …

A data-driven evaluation of Arabidopsis-centric research and the model species concept

S Palande, J Arsenault, P Basurto-Lozada, A Bleich… - bioRxiv, 2023 - biorxiv.org
The selection of Arabidopsis as a model organism played a pivotal role in advancing
genomic science, firmly establishing the cornerstone of modern plant molecular biology …

Biological insights from multi-omics analysis strategies: Complex pleotropic effects associated with autophagy

G Ding, Y Mugume, ME Dueñas, YJ Lee… - Frontiers in Plant …, 2023 - frontiersin.org
Research strategies that combine molecular data from multiple levels of genome expression
(ie, multi-omics data), often referred to as a systems biology strategy, has been advocated as …