[HTML][HTML] The future of biotic indices in the ecogenomic era: Integrating (e) DNA metabarcoding in biological assessment of aquatic ecosystems

J Pawlowski, M Kelly-Quinn, F Altermatt… - Science of the Total …, 2018 - Elsevier
The bioassessment of aquatic ecosystems is currently based on various biotic indices that
use the occurrence and/or abundance of selected taxonomic groups to define ecological …

[HTML][HTML] Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring

M Sagova-Mareckova, J Boenigk, A Bouchez… - Water research, 2021 - Elsevier
Bioindication has become an indispensable part of water quality monitoring in most
countries of the world, with the presence and abundance of bioindicator taxa, mostly …

Do plastics serve as a possible vector for the spread of antibiotic resistance? First insights from bacteria associated to a polystyrene piece from King George Island …

P Laganà, G Caruso, I Corsi, E Bergami… - International journal of …, 2019 - Elsevier
The retrieval of a polystyrene macro-plastic piece stranded on the shores in King George
Island (South Shetlands, Antarctica) gave the opportunity to explore the associated bacterial …

Implementing and innovating marine monitoring approaches for assessing marine environmental status

R Danovaro, L Carugati, M Berzano… - Frontiers in Marine …, 2016 - frontiersin.org
Marine environmental monitoring has tended to focus on site-specific methods of
investigation. These traditional methods have low spatial and temporal resolution and are …

Adapting metabarcoding-based benthic biomonitoring into routine marine ecological status assessment networks

E Aylagas, Á Borja, I Muxika, N Rodríguez-Ezpeleta - Ecological Indicators, 2018 - Elsevier
The use of genomic approaches to assist with biodiversity estimations is an alternative to
traditional biomonitoring, which is very time-consuming and costly. In response to the high …

A bacterial community-based index to assess the ecological status of estuarine and coastal environments

E Aylagas, Á Borja, M Tangherlini, A Dell'Anno… - Marine pollution …, 2017 - Elsevier
Biotic indices for monitoring marine ecosystems are mostly based on the analysis of benthic
macroinvertebrate communities. Due to their high sensitivity to pollution and fast response to …

Microbial community assembly responses to polycyclic aromatic hydrocarbon contamination across water and sediment habitats in the Pearl River Estuary

W Lin, F Fan, G Xu, K Gong, X Cheng, X Yuan… - Journal of Hazardous …, 2023 - Elsevier
Along with rapid urbanization and intensive human activities, polycyclic aromatic
hydrocarbon (PAH) pollution in the Pearl River Estuary (PRE) and its effects on the microbial …

DNA sequencing as a tool to monitor marine ecological status

KD Goodwin, LR Thompson, B Duarte… - Frontiers in Marine …, 2017 - frontiersin.org
Many ocean policies mandate integrated, ecosystem-based approaches to marine
monitoring, driving a global need for efficient, low-cost bioindicators of marine ecological …

[HTML][HTML] Exploring the impacts of heavy metals on spatial variations of sediment-associated bacterial communities

M Rajeev, TJ Sushmitha, C Aravindraja… - Ecotoxicology and …, 2021 - Elsevier
One of the fundamental objectives in modern ecology is to decipher how bacterial
communities in natural environment respond to anthropogenic activities. In recent times …

metaGOflow: a workflow for the analysis of marine Genomic Observatories shotgun metagenomics data

H Zafeiropoulos, M Beracochea, S Ninidakis… - …, 2023 - academic.oup.com
Abstract Background Genomic Observatories (GOs) are sites of long-term scientific study
that undertake regular assessments of the genomic biodiversity. The European Marine …