Phaeodactylum tricornutum: a diatom cell factory
A switch from a petroleum-based to a biobased economy requires the capacity to produce
both high-value low-volume and low-value high-volume products. Recent evidence supports …
both high-value low-volume and low-value high-volume products. Recent evidence supports …
Genome-scale metabolic modeling enables in-depth understanding of big data
Genome-scale metabolic models (GEMs) enable the mathematical simulation of the
metabolism of archaea, bacteria, and eukaryotic organisms. GEMs quantitatively define a …
metabolism of archaea, bacteria, and eukaryotic organisms. GEMs quantitatively define a …
RAVEN 2.0: A versatile toolbox for metabolic network reconstruction and a case study on Streptomyces coelicolor
RAVEN is a commonly used MATLAB toolbox for genome-scale metabolic model (GEM)
reconstruction, curation and constraint-based modelling and simulation. Here we present …
reconstruction, curation and constraint-based modelling and simulation. Here we present …
BiGG Models 2020: multi-strain genome-scale models and expansion across the phylogenetic tree
CJ Norsigian, N Pusarla, JL McConn… - Nucleic acids …, 2020 - academic.oup.com
Abstract The BiGG Models knowledge base (http://bigg. ucsd. edu) is a centralized
repository for high-quality genome-scale metabolic models. For the past 12 years, the …
repository for high-quality genome-scale metabolic models. For the past 12 years, the …
Mixotrophic cultivation of microalgae: an alternative to produce high-value metabolites
T Castillo, D Ramos, T García-Beltrán… - Biochemical …, 2021 - Elsevier
Microalgae are important sources of biotechnological products, including pigments, lipids,
polyunsaturated fatty acids, polysaccharides, vitamins, and other bioactive compounds …
polyunsaturated fatty acids, polysaccharides, vitamins, and other bioactive compounds …
Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom
Diatoms outcompete other phytoplankton for nitrate, yet little is known about the
mechanisms underpinning this ability. Genomes and genome-enabled studies have shown …
mechanisms underpinning this ability. Genomes and genome-enabled studies have shown …
Diatoms biotechnology: various industrial applications for a greener tomorrow
N Sharma, DP Simon, AM Diaz-Garza… - Frontiers in Marine …, 2021 - frontiersin.org
The benefits of the complex microscopic and industrially important group of microalgae such
as diatoms is not hidden and have lately surprised the scientific community with their …
as diatoms is not hidden and have lately surprised the scientific community with their …
Diatom molecular research comes of age: model species for studying phytoplankton biology and diversity
A Falciatore, M Jaubert, JP Bouly, B Bailleul… - The Plant …, 2020 - academic.oup.com
Diatoms are the world's most diverse group of algae, comprising at least 100,000 species.
Contributing~ 20% of annual global carbon fixation, they underpin major aquatic food webs …
Contributing~ 20% of annual global carbon fixation, they underpin major aquatic food webs …
A critical review of genome editing and synthetic biology applications in metabolic engineering of microalgae and cyanobacteria
Being the green gold of the future, microalgae and cyanobacteria have recently attracted
considerable interest worldwide, for their metabolites such as lipids, protein, pigments, and …
considerable interest worldwide, for their metabolites such as lipids, protein, pigments, and …
Elucidation of complexity and prediction of interactions in microbial communities
Microorganisms engage in complex interactions with other members of the microbial
community, higher organisms as well as their environment. However, determining the exact …
community, higher organisms as well as their environment. However, determining the exact …